# DOT-HUB Toolbox
This toolbox is a set of scripts and functions (and examples), that supports all the steps required to go from raw fNIRS/DOT/HD-DOT data to 3D and grey-matter-surface diffuse optical tomography images. Currently built around TOAST++. This toolbox was written primarily for internal use at UCL, so change requests/support may or may not be possible.
INSTALLATION:
Clone the DOT-HUB Toolbox repository to your local drive, and add it to your matlab path. You will also need:
Toast++ (http://web4.cs.ucl.ac.uk/research/vis/toast/) downloaded and in your matlab path.
Homer2 (tested with v2.8: https://www.nitrc.org/projects/homer2/) src code (not installation) downloaded and in your matlab path.
DOT-HUB 工具箱，支持从原始 fNIRS/DOT/HD-DOT 数据到 3D 和 GM 表面图像所需的所有步骤MATLAB
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2022-06-15
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DOT-HUB 工具箱，支持从原始 fNIRS/DOT/HD-DOT 数据到 3D 和 GM 表面图像所需的所有步骤MATLAB （128个子文件） 
intensity_01.bin 72.81MB intensity_02.bin 47.26MB intensity_01.bin 47.26MB intensity_01.bin 47.26MB intensity_02.bin 47.26MB preproPipelineExample1.cfg 421B preproPipelineExample2.cfg 421B preproPipelineExample1_noRegression.cfg 338B preproPipelineExample2.cfg 338B Example1_Polhemus.csv 2KB Example2_Polhemus.csv 2KB git 0B .gitattributes 66B .gitignore 205B .gitignore 97B .gitignore 85B .gitignore 81B .gitignore 74B .gitignore 68B .gitignore 50B .gitmodules 225B layout.json 15KB layout.json 15KB layout.json 15KB LICENSE 34KB LICENSE 34KB LICENSE 34KB lumo.log 13KB lumo.log 11KB lumo.log 11KB DOTHUB_getTen5points.m 88KB DOTHUB_getTissueCoeffs.m 34KB DOTHUB_LUFR2nirs.m 27KB DOTHUB_hmrDeconvHRF_DriftSS_Local.m 26KB DOTHUB_LUMO2nirs.m 20KB DOTHUB_LUMO2nirsHyper.m 19KB DOTHUB_getPLYPoints.m 18KB DOTHUB_reconstruction.m 16KB read_ply.m 16KB DOTHUB_makeMesh.m 16KB DOTHUB_invertJacobian.m 14KB DOTHUB_hmrSSRegressionByChannel.m 14KB DOTHUB_makeToastJacobian.m 13KB DOTHUB_adultMRISegmentSPM.m 13KB DOTHUB_LUMOpolhemus2SD3D.m 12KB loadlufr.m 12KB DOTHUB_dataQualityCheck.m 11KB DOTHUB_makeNIRFASTJacobian.m 9KB DOTHUB_LUMOcreate2DSD.m 9KB DOTHUB_runHomerPrepro.m 9KB DOTHUB_LUMOplotArray.m 8KB DOTHUB_writePREPRO.m 7KB DOTHUB_plotSurfaceDOTIMG.m 6KB DOTHUB_LUMOSD2layout.m 6KB DOTHUB_plotIntVDist.m 5KB DOTHUB_writeRMAP.m 5KB DOTHUB_makeGMSensitivityMap.m 5KB DOTHUB_plotVolumeDOTIMG.m 5KB DOTHUB_LUMOlayout2SD.m 5KB DOTHUB_meshRegistration.m 5KB PipelineExample1.m 5KB DOTHUB_writeDOTIMG.m 5KB DOTHUB_writeMSHS.m 5KB DOTHUB_writeJAC.m 5KB shadedErrorBar.m 4KB DOTHUB_writeINVJAC.m 4KB DOTHUB_plotIntVTime.m 4KB DOTHUB_plotVolumeImage.m 4KB DOTHUB_plotPSD.m 4KB PipelineExample2.m 3KB DOTHUB_plotHRF.m 3KB DOTHUB_movieSurfaceDOTIMG.m 3KB DOTHUB_plotSD.m 3KB DOTHUB_cropNIRSfile.m 3KB DOTHUB_affineMap.m 2KB DOTHUB_hmrConc2OD.m 2KB DOTHUB_resampleNIRS.m 2KB DOTHUB_LUMOplotMPU.m 2KB DOTHUB_createNodalTissueInd.m 2KB DOTHUB_plotSurfaceImage.m 2KB DOTHUB_plotIntMatrix.m 2KB DOTHUB_plotChanHist.m 1KB DOTHUB_vol2gmMap.m 1KB DOTHUB_plotRMAP.m 1KB DOTHUB_writeToastQM.m 1KB DOTHUB_nearestNode.m 1KB PipelineTmp.m 1KB DOTHUB_SD2linklist.m 631B DOTHUB_affineTrans.m 433B DOTHUB_balanceMeasListAct.m 410B rotz.m 356B rotx.m 355B roty.m 354B DOTHUB_getSDdists.m 340B DOTHUB_ply2Mesh.m 298B DOTHUB_range.m 288B tmp.mat 42.77MB T1_seg8.mat 6.08MB groupResults.mat 206KB greyJet.mat 700B共 128 条
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