鲑鱼：使用选择性比对，可从RNA-seq读取物中进行高精度且快速的转录本水平定量
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2021-03-03
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鲑鱼：使用选择性比对，可从RNA-seq读取物中进行高精度且快速的转录本水平定量 （801个子文件） 
AdolcForward 4KB AlignedVector3 6KB ArpackSupport 905B AutoDiff 1KB cpld.bash 738B BVH 5KB xxhash.c 30KB format.cc 16KB posix.cc 8KB posix.cc 7KB mer_dna.cc 963B ostream.cc 893B printf.cc 752B Cholesky 1KB CholmodSupport 2KB .clang-format 3KB FindTBB.cmake 12KB FindJemalloc.cmake 2KB TestSalmonQuasi.cmake 1KB TestSalmonFMD.cmake 1KB Findlibstadenio.cmake 1KB FindTcmalloc.cmake 1KB SimpleTest.cmake 1KB FindJellyfish.cmake 1KB PostInstall.cmake 1KB FindCereal.cmake 752B Findlibdivsufsort.cmake 741B Findlibgff.cmake 396B UnitTests.cmake 366B .cmakelintrc 19B Core 17KB SalmonUtils.cpp 146KB SalmonAlevin.cpp 114KB SalmonQuantify.cpp 107KB edlib.cpp 83KB SalmonQuantifyAlignments.cpp 70KB GZipWriter.cpp 67KB CollapsedCellOptimizer.cpp 56KB AlevinUtils.cpp 50KB ProgramOptionsGenerator.cpp 50KB Alevin.cpp 40KB CollapsedGibbsSampler.cpp 37KB CollapsedEMOptimizer.cpp 36KB AlignmentModel.cpp 21KB DedupUMI.cpp 20KB SGSmooth.cpp 16KB FastxParser.cpp 15KB WhiteList.cpp 13KB SBModel.cpp 11KB PCA.cpp 10KB Salmon.cpp 10KB LibraryTypeTests.cpp 10KB BuildSalmonIndex.cpp 10KB AlevinHash.cpp 10KB SalmonQuantMerge.cpp 10KB SequenceBiasModel.cpp 9KB FragmentList.cpp 8KB FragmentLengthDistribution.cpp 7KB FragmentStartPositionDistribution.cpp 6KB DistributionUtils.cpp 6KB PCAUtils.cpp 5KB FASTAParser.cpp 4KB KmerHistTests.cpp 4KB GenomicFeature.cpp 3KB SimplePosBias.cpp 3KB EMUtils.cpp 3KB LibraryFormat.cpp 3KB GCSampleTests.cpp 3KB BAMUtils.cpp 2KB Graph.cpp 2KB TestUtils.cpp 2KB EffectiveLengthStats.cpp 2KB wrapper.cpp 1KB TranscriptGroup.cpp 1KB SalmonExceptions.cpp 1KB VersionChecker.cpp 1KB SingleCellProtocols.cpp 892B SalmonStringUtils.cpp 680B UnitTests.cpp 396B int128_numeric_limits.cpp 382B StadenUtils.cpp 284B Dense 122B Dockerfile 2KB Dockerfile 2KB Eigen 35B Eigenvalues 2KB EulerAngles 1KB FFT 14KB Geometry 2KB .gitignore 265B
alevin_test_data.tar.gz 3.25MB lapacke.h 1.01MB phmap_base.h 177KB phmap.h 163KB concurrentqueue.h 145KB format.h 126KB peglib.h 123KB format.h 87KB GeneralBlockPanelKernel.h 79KB Eigen_Colamd.h 61KB共 801 条
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