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DFT的matlab源代码-neutromeratio:溶液中互变异构体比率
共507个文件
csv:346个
dcd:44个
py:40个
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2021-05-26
04:30:59
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DFT的matlab源代码中性 使用神经网络电势来计算互变异构体比率。 介绍 互变异构体比率的准确计算是困难的。 质子转移React的量子方面和由双键位置变化引入的熵变化提出了特殊的理论挑战。 关于互变异构体比率计算的大多数已发表的著作都具有现象学特征,并且更仔细的检查揭示了不合理的假设和/或错误的消除。 确定互变异构体比率的可靠方法理想地包括在显性水中进行构象采样,以及以QM级精度计算势能。 这两个目标似乎是合理的,并且随着诸如ANI-1这样的神经网络电势的发展可以触及,该神经电势使得能够以DFT级精度和能量场(如时间成本)进行能量计算。 这样可以在确保高水平QM能量计算的同时探索构象自由度。 安装 通过git clone和python setup install安装neutromeratio master: git clone https://github.com/choderalab/neutromeratio.git cd neutromeratio python setup.py install 您将需要安装一些依赖项---它们都在中定义。 数据 此处提供了用于重现图形的数据
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DFT的matlab源代码-neutromeratio:溶液中互变异构体比率 (507个子文件)
make.bat 781B
setup.cfg 598B
neutromeratio-workspace.code-workspace 60B
molDWRow_298_lambda_0.3000_energy_in_droplet.csv 193KB
molDWRow_298_lambda_0.8000_energy_in_droplet.csv 193KB
molDWRow_298_lambda_1.0000_energy_in_droplet.csv 193KB
molDWRow_298_lambda_0.2000_energy_in_droplet.csv 193KB
molDWRow_298_lambda_0.7000_energy_in_droplet.csv 193KB
molDWRow_298_lambda_0.1000_energy_in_droplet.csv 193KB
molDWRow_298_lambda_0.6000_energy_in_droplet.csv 193KB
molDWRow_298_lambda_0.9000_energy_in_droplet.csv 193KB
molDWRow_298_lambda_0.0000_energy_in_droplet.csv 193KB
molDWRow_298_lambda_0.5000_energy_in_droplet.csv 193KB
molDWRow_298_lambda_0.4000_energy_in_droplet.csv 193KB
molDWRow_298_lambda_0.3000_restraint_energy_contribution_in_droplet.csv 180KB
molDWRow_298_lambda_0.7000_restraint_energy_contribution_in_droplet.csv 179KB
molDWRow_298_lambda_0.2000_restraint_energy_contribution_in_droplet.csv 179KB
molDWRow_298_lambda_0.9000_restraint_energy_contribution_in_droplet.csv 179KB
molDWRow_298_lambda_1.0000_restraint_energy_contribution_in_droplet.csv 179KB
molDWRow_298_lambda_0.8000_restraint_energy_contribution_in_droplet.csv 179KB
molDWRow_298_lambda_0.5000_restraint_energy_contribution_in_droplet.csv 179KB
molDWRow_298_lambda_0.0000_restraint_energy_contribution_in_droplet.csv 178KB
molDWRow_298_lambda_0.1000_restraint_energy_contribution_in_droplet.csv 178KB
molDWRow_298_lambda_0.4000_restraint_energy_contribution_in_droplet.csv 178KB
molDWRow_298_lambda_0.6000_restraint_energy_contribution_in_droplet.csv 178KB
molDWRow_298_lambda_0.3000_energy_in_vacuum.csv 95KB
SAMPLmol4_lambda_0.2000_energy_in_vacuum.csv 95KB
SAMPLmol4_lambda_0.9000_energy_in_vacuum.csv 95KB
SAMPLmol2_lambda_0.2000_energy_in_vacuum.csv 95KB
SAMPLmol4_lambda_0.4000_energy_in_vacuum.csv 95KB
molDWRow_298_lambda_0.8000_energy_in_vacuum.csv 95KB
molDWRow_298_lambda_0.0000_energy_in_vacuum.csv 95KB
molDWRow_298_lambda_0.5000_energy_in_vacuum.csv 95KB
SAMPLmol2_lambda_0.7000_energy_in_vacuum.csv 95KB
SAMPLmol2_lambda_0.5000_energy_in_vacuum.csv 95KB
SAMPLmol4_lambda_0.0000_energy_in_vacuum.csv 95KB
SAMPLmol4_lambda_1.0000_energy_in_vacuum.csv 95KB
molDWRow_298_lambda_1.0000_energy_in_vacuum.csv 95KB
SAMPLmol2_lambda_0.1000_energy_in_vacuum.csv 95KB
molDWRow_298_lambda_0.6000_energy_in_vacuum.csv 95KB
molDWRow_298_lambda_0.1000_energy_in_vacuum.csv 95KB
SAMPLmol4_lambda_0.8000_energy_in_vacuum.csv 95KB
SAMPLmol2_lambda_0.8000_energy_in_vacuum.csv 95KB
molDWRow_298_lambda_0.2000_energy_in_vacuum.csv 94KB
SAMPLmol4_lambda_0.5000_energy_in_vacuum.csv 94KB
SAMPLmol2_lambda_0.6000_energy_in_vacuum.csv 94KB
SAMPLmol4_lambda_0.6000_energy_in_vacuum.csv 94KB
SAMPLmol4_lambda_0.3000_energy_in_vacuum.csv 94KB
molDWRow_298_lambda_0.7000_energy_in_vacuum.csv 94KB
molDWRow_298_lambda_0.4000_energy_in_vacuum.csv 94KB
molDWRow_298_lambda_0.9000_energy_in_vacuum.csv 94KB
SAMPLmol2_lambda_0.0000_energy_in_vacuum.csv 94KB
SAMPLmol2_lambda_0.9000_energy_in_vacuum.csv 94KB
SAMPLmol4_lambda_0.7000_energy_in_vacuum.csv 94KB
SAMPLmol2_lambda_0.3000_energy_in_vacuum.csv 94KB
SAMPLmol2_lambda_0.4000_energy_in_vacuum.csv 94KB
SAMPLmol2_lambda_1.0000_energy_in_vacuum.csv 94KB
SAMPLmol4_lambda_0.1000_energy_in_vacuum.csv 94KB
b3lyp_SMD_kcal_mol.csv 54KB
ani1ccx_kcal_mol.csv 47KB
mm_kcal_mol.csv 39KB
ANI1ccx_droplet_18A_alchemical_dG_unfiltered.csv 20KB
ANI1ccx_droplet_18A_alchemical_dG_filtered.csv 20KB
AlchemicalANI1ccx_droplet_rfe_results_in_kT_100ps_300snapshots.csv 19KB
AlchemicalANI1ccx_droplet_rfe_results_in_kT_100ps_300snapshots.csv 19KB
AlchemicalANI2x_droplet_100ps_rfe_results_in_kT_300snapshots.csv 19KB
AlchemicalANI2x_droplet_100ps_rfe_results_in_kT_300snapshots.csv 19KB
ANI1ccx_vacuum_rfe_results_in_kT_300snapshots_p3.csv 19KB
rfe_results_in_kT_200ps.csv 19KB
ANI1ccx_vacuum_rfe_results_in_kT_300snapshots_p2.csv 19KB
ANI1ccx_vacuum_rfe_results_in_kT_300snapshots_p1.csv 19KB
AlchemicalANI1ccx_vacuum_rfe_results_in_kT_200ps_300snapshots_p2.csv 19KB
AlchemicalANI1ccx_vacuum_rfe_results_in_kT_200ps_300snapshots_p1.csv 19KB
ANI1ccx_vacuum_rfe_results_in_kT_300snapshots_p5.csv 19KB
rfe_results_in_kT_200ps_p1.csv 19KB
AlchemicalANI1ccx_droplet_rfe_results_in_kT_300snapshots.csv 18KB
ANI1ccx_vacuum_rfe_results_in_kT_300snapshots_p4.csv 18KB
rfe_results_in_kT_100ps.csv 18KB
MM_ANI1ccx_vacuum_with_entropy_correction.csv 15KB
MM_ANI1ccx_vacuum.csv 15KB
PhysNet_vacuum.csv 15KB
MM_ANI1ccx_vacuum.csv 14KB
ANI1ccx_vacuum_random_minimum_dG.csv 13KB
ANI1ccx_vacuum_random_minimum_dG_with_entropy_correction.csv 13KB
ANI1ccx_vacuum_random_minimum_dE.csv 13KB
ANI1ccx_vacuum_global_minimum_dE_with_entropy_correction.csv 13KB
ANI1ccx_vacuum_random_minimum_dE_with_entropy_correction.csv 13KB
ANI1ccx_vacuum_global_minimum_dG_with_entropy_correction.csv 13KB
ANI1ccx_vacuum_global_minimum_dG.csv 13KB
ANI1ccx_vacuum_global_minimum_dE.csv 13KB
ANI1ccx_vacuum_random_minimum_dG_only_one_stereo_with_entropy_correction.csv 12KB
ANI1ccx_vacuum_random_minimum_dE_only_one_stereo_with_entropy_correction.csv 12KB
ANI1ccx_vacuum_global_minimum_dG_only_one_stereo_with_entropy_correction.csv 12KB
ANI1ccx_vacuum_global_minimum_dE_only_one_stereo_with_entropy_correction.csv 12KB
AlchemicalANI2x_droplet_rfe_results_in_kT_300snapshots.csv 5KB
PhysNet_vacuum_NN.csv 5KB
PhysNet_vacuum_QM.csv 5KB
molDWRow_35_t1.csv 429B
molDWRow_184_t2.csv 428B
molDWRow_418_t2.csv 416B
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