Sunflower_Mutation_Load
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2021-04-06
03:10:30
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Sunflower_Mutation_Load （100个子文件） 
Ancestral_Sequence_Config 1KB Annuus_Landraces 785B bcftools_output 41KB bcftools_output_XRQsnps 67KB INTERVALS_20k_atNs.bed 5KB Common_Config 2KB Common_Config_Set1 2KB All_SAM_Info.csv 32KB Line_Info.csv 24KB Annuus_SRAdownloads.csv 5KB .DS_Store 10KB adapters_nextera.fa 733B Adapters.fa 501B .gitignore 105B SAM_hetIND_GTfiltered.het 12KB VCF_Exploration_and_Filtering_Notebook.ipynb 430KB Med_Scaffolds_Intervals.list 10KB LargeScaffolds_Intervals.list 1007B README.md 19KB README.md 16KB README.md 14KB README.md 12KB README.md 10KB Variant_Analyses.md 8KB README.md 6KB README.md 6KB README.md 5KB SFS_Rgraphs.md 4KB aws_info.md 3KB FileInformation.md 3KB Variant_classes.md 3KB README.md 2KB UGA_Bad_mutations.md 2KB README.md 2KB README.md 25B
Sunflower_SAM_SNP_Calling_snps.plots.R.pdf 9.5MB Sunflower_SAM_SNP_Calling_snps.tranches.pdf 14KB
Raw_annotations.png 78KB QUALvtstv.png 38KB Variant_annotations.R 8KB Heterozygosity_exploration.R 7KB Variant_annotation_Plots.R 5KB SRA_Metadata.R 4KB TruthSet_AnnotationDistr.R 3KB Filter_QC.R 2KB SFS.Rmd 6KB Admixture.Rmd 6KB PCA.Rmd 2KB InbreedingCoefficients.Rmd 1KB Filter_AllSteps.sh 7KB bad_mut_predict.sh 7KB bad_mut_predict-sunflower.job.sh 4KB bad_mut_align.sh 3KB bad_mut_compile_predictions.sh 3KB bad_mut_compile_predict.job.sh 2KB Stampy_mapping.sh 2KB gatk_FilterMinDP.sh 2KB gatk_SelectVarGeno.sh 1KB Het_filter.sh 1KB VeP.sh 1KB MakeFastas.sh 1KB Variant_Table_Subset.sh 1KB gatk_SelectConcordant.sh 1KB gatk_SelectVariantsExcessHet.sh 1KB VariantQC.sh 1KB gatk_SelectVariants.sh 1KB gatk_SelectVarRemoveNonVar.sh 1KB gatk_FilterVarGeno.sh 1KB SNP_stats.sh 992B gatk_SelectVariantsQUAL.sh 981B Cat_SRA.sh 924B FASTA_check.sh 895B ANGSD_Job.sh 887B HC_Subset_step6.sh 881B SRA_download.sh 864B AlignBowtie.sh 822B NormalizeVCF.sh 788B bcftools_missingfilter.sh 731B Het_filter_bcftools.sh 711B Concatenate.sh 681B Freq.sh 641B FASTA_AllCDs.sh 634B RefBuild.sh 576B gzip_vcf.sh 484B VCF_convert.sh 432B TestSlurm_MSI.sh 270B Test_Config081720 408B
UBC_Dataset_Stats.txt 92KB SAM_SNPs_filtered_Stats.txt 59KB SAM_SNPs_GTfilteredStats.txt 43KB SAM_SNPs_GTfilteredStatsQUAL.txt 28KB config.txt 702B Sunflower_SAM_SNP_Calling_filtered1_GQ.txt 693B Sunflower_SAM_SNP_Calling_filtered1_DP_per_sample.txt 675B Sunflower_SAM_SNP_Calling_unfiltered_GQ.txt 673B Sunflower_SAM_SNP_Calling_unfiltered_DP_per_sample.txt 627B New_Adapter_Seqs_noNexteratransposae.txt 501B WildAnnuusOnePerPop 7KB WildAnnuusPops 4KB WildAnnuusSubset1 356B共 100 条
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