tidybulk:将转录组学带到tidyverse （218个子文件） 
CITATION 690B Thumbs.db 12KB DESCRIPTION 2KB .gitignore 194B .gitignore 7B
introduction.html 539KB README.md 37KB NAMESPACE 4KB
pasilla_benchmark.pdf 9KB
new_SE_usage-01.png 176KB plot_mds-1.png 144KB SNN_plot-1.png 63KB plot_pca-1.png 60KB plot_cibersort-1.png 57KB plot_normalise-1.png 38KB unnamed-chunk-12-1.png 38KB unnamed-chunk-11-1.png 38KB unnamed-chunk-13-1.png 37KB logo.png 35KB plot_rotate_2-1.png 18KB unnamed-chunk-16-1.png 17KB unnamed-chunk-17-1.png 17KB plot_drop2-1.png 16KB plot_rotate_1-1.png 16KB plot_drop-1.png 14KB plot_cluster-1.png 13KB methods.R 121KB functions.R 97KB methods_SE.R 52KB utilities.R 41KB dplyr-master-methods.R 34KB test-bulk_methods.R 34KB functions_SE.R 33KB dplyr_methods.R 25KB introduction.R 13KB test-bulk_methods_SummarizedExperiment.R 10KB validation.R 10KB bibliography.R 9KB cibersort.R 7KB pasilla_workflow.R 7KB signature_workflow.R 7KB TCGA_workflow_standard.R 7KB pasilla_workflow_standard.R 6KB TCGA_workflow_ttBulk_for_comparison.R 5KB pasilla_workflow_ttBulk_for_comparison.R 5KB tidyr_methods.R 4KB pasilla_comparative_analyses.R 2KB N52_workflow.R 2KB format_GO.R 1KB data.R 901B zzz.R 774B utils-pipe.R 363B tidybulk-package.R 120B dictionary.R 70B testthat.R 60B .Rbuildignore 199B test_differential_abundance-methods.Rd 8KB test_differential_cellularity-methods.Rd 5KB test_stratification_cellularity-methods.Rd 5KB rotate_dimensions-methods.Rd 5KB reduce_dimensions-methods.Rd 5KB remove_redundancy-methods.Rd 4KB test_gene_enrichment-methods.Rd 4KB cluster_elements-methods.Rd 4KB identify_abundant-methods.Rd 4KB scale_abundance-methods.Rd 4KB deconvolve_cellularity-methods.Rd 4KB keep_abundant-methods.Rd 4KB adjust_abundance-methods.Rd 3KB aggregate_duplicates-methods.Rd 3KB test_gene_overrepresentation-methods.Rd 3KB summarise-methods.Rd 3KB mutate-methods.Rd 3KB keep_variable-methods.Rd 3KB impute_missing_abundance-methods.Rd 2KB filter-methods.Rd 2KB get_bibliography-methods.Rd 2KB arrange-methods.Rd 2KB get_differential_transcript_abundance_bulk.Rd 2KB tidybulk-methods.Rd 2KB fill_missing_abundance-methods.Rd 2KB describe_transcript-methods.Rd 2KB get_differential_transcript_abundance_bulk_SE.Rd 2KB nest-methods.Rd 2KB ensembl_to_symbol-methods.Rd 2KB bind-methods.Rd 2KB get_differential_transcript_abundance_deseq2.Rd 2KB pivot_transcript-methods.Rd 2KB get_differential_transcript_abundance_bulk_voom.Rd 2KB group_by-methods.Rd 2KB pivot_sample-methods.Rd 1KB get_differential_transcript_abundance_deseq2_SE.Rd 1KB get_differential_transcript_abundance_bulk_voom_SE.Rd 1KB rename-methods.Rd 1KB test_gene_enrichment_bulk_EGSEA.Rd 1KB as_SummarizedExperiment-methods.Rd 1KB join-methods.Rd 1KB remove_redundancy_elements_through_correlation.Rd 1KB get_reduced_dimensions_PCA_bulk.Rd 1KB tidybulk_SAM_BAM-methods.Rd 1KB共 218 条
- 1
- 2
- 3
评论0