SPOTlight:空间转录组学捕获位置反卷积
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2021-04-29
23:54:07
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SPOTlight-master.zip （84个子文件） 
SPOTlight-master 
SpatialDeconTest.Rproj 356B docker docker_rstudio Dockerfile 2KB docker_renv Dockerfile 2KB
index.html 24.91MB NAMESPACE 583B sample_data allen_cortex_dwn.rds 84.7MB markers_anterior.RDS 62KB spatial 
tissue_lowres_image.png 457KB spotlight_ls_anterior.RDS 487KB DESCRIPTION 1KB img 
QC_plot_pbmc_2019-11-26.pdf 316KB graph_network.png 422KB Feat_plot_CC.png 129KB Feat_plot_CC.pdf 1.29MB topic_profile_profile_brain.png 127KB QC_plots_comb.pdf 450KB topic_profile_brain_annotated.png 87KB QC_plots_comp.pdf 4KB SPOTlight_scheme.pdf 394KB QC_plots_comb.png 187KB graph_network_new.png 337KB SPOTlight_VF2.png 157KB graphical_abstract_deconvolution.png 150KB topic_visualization.png 2.08MB UMAP_demuxlet.pdf 228KB spatial_spots_brain.png 1MB SPOTlight_scheme.png 1.48MB SPOTlight_graphical_abstract.png 316KB pie_charts_1.png 121KB UMAP_demuxlet.png 105KB pie_charts_2.png 121KB inst WORDLIST 52B allen_cortex_dwn.rds 84.7MB markers_anterior.RDS 62KB spatial tissue_lowres_image.png 457KB spotlight_ls_anterior.RDS 487KB R topic_profile_per_cluster_nmf_fun.R 1KB scatterpie_plot_fun.R 4KB dot_plot_profiles_fun.R 4KB coloc_heatmap_fun.R 3KB test_spot_fun.R 5KB prep_seobj_topic_fun.R 772B spatial_decon_syn_assessment_nmf_fun.R 6KB test_synthetic_performance_fun.R 4KB mixture_deconvolution_nmf_fun.R 3KB plot_image_fun.R 2KB seed_init_mtrx_nmf_fun.R 3KB cut_markers2_fun.R 2KB downsample_se_obj_fun.R 3KB get_spatial_interaction_graph_fun.R 2KB predict_spatial_mixtures_nmf_fun.R 3KB train_nmf.R 6KB spotlight_deconvolution.R 4KB spatial_scatterpie_fun.R 5KB LICENSE 47B LICENSE.md 1KB README.md 2KB man spatial_decon_syn_assessment_nmf_fun.Rd 2KB figures README-unnamed-chunk-10-2.png 280KB README-unnamed-chunk-10-1.png 40KB README-unnamed-chunk-16-1.png 246KB README-unnamed-chunk-18-1.png 257KB README-unnamed-chunk-22-1.png 54KB README-unnamed-chunk-17-1.png 276KB README-unnamed-chunk-20-1.png 75KB get_spatial_interaction_graph.Rd 553B spotlight_deconvolution.Rd 3KB seed_init_mtrx_nmf.Rd 824B plot_image.Rd 663B dot_plot_profiles_fun.Rd 938B downsample_se_obj.Rd 1KB prep_seobj_topic_fun.Rd 609B test_synthetic_performance.Rd 1KB test_spot_fun.Rd 893B scatterpie_plot.Rd 2KB cut_markers2.Rd 619B mixture_deconvolution_nmf.Rd 1KB spatial_scatterpie.Rd 2KB topic_profile_per_cluster_nmf.Rd 947B train_nmf.Rd 2KB predict_spatial_mixtures_nmf.Rd 1KB get_colocalization_heatmap.Rd 626B _config.yml 27B README.Rmd 14KB
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