STAU1_hiCLIP-master.zip （92个子文件） 
STAU1_hiCLIP-master 
TODO 0B inst Python hiClipBarcode-LeftRight-READ.py 10KB shuffle_RNAcoFold.py 2KB RNAcofoldAnalysis.py 4KB runRNAfold.py 3KB test.py 746B runRNAhybrid.py 2KB runRibosomeProfilingAnalysis-4.0.py 9KB runHybridAnalysis_transcripts-2.0.0.py 20KB parse_RNAhybrid parse_rnahybrid.py 11KB .idea .name 15B parse_RNAhybrid.iml 575B parse_rnahybrid_uncumurative.py 9KB hiClipBarcode-one-READ.py 8KB selectHybrid-3.1.0.py 7KB runRNAforgi_parallel.py 3KB RNAfold_structure 
wrapper2_ps_color.txt 120B add_color.py 4KB wrapper_ps_color.txt 960B RNAfold.py 3KB add_color.py 4KB runRNAhybrid_parallel.py 3KB RNAfold.py 3KB parse_RNAfold .idea parse_RNAfold.iml 575B parse_RNAfold_centroid.py 4KB parse_RNAfold.py 4KB repeatEnrichmentFa.py 3KB swapBarcodes.py 1KB samToBed-2.0.py 11KB REE_out STAU1_nonhybrid_vs_mRNASeq_repenr.std.csv 40KB readme_REE_out.md 1KB STAU1_totaliCLIP_vs_mRNASeq_repenr.std.csv 39KB hnRNPc_iCLIP_vs_mRNASeq_repenr.std.csv 39KB doc hiCLIP_data_analysis_4.Rnw 4KB data_preprocessing_2.Rnw 9KB hiCLIP_data_analysis_9.Rnw 15KB hiCLIP_data_analysis_8.Rnw 5KB hiCLIP_data_analysis_5.Rnw 5KB hiCLIP_data_analysis_3.Rnw 7KB .RData 3KB hiCLIP_data_analysis_2.Rnw 13KB hiCLIP_data_analysis_6.Rnw 8KB data_preprocessing_3.Rnw 4KB hiCLIP_data_analysis_7.Rnw 12KB hiCLIP_data_analysis_1.Rnw 21KB data_preprocessing_1.Rnw 14KB doc .gitignore 0B .gitignore 130B R mergeSamNonHybrid.R 964B functions parse.cts.R 2KB nonHybrid_functions.R 6KB count_table_functions.R 5KB parse_RNAforgi.R 3KB mergeBedSimple.R 3KB plot_functions.R 420B master_table_functions.R 786B DESeq_functions.R 1KB forTest.R 578B visulalization_circos_plot circoPlots_norm_files ud_colors.conf 3KB HiCLIP_mRNA_norm.conf 5KB fonts.conf 1003B circoPlots_links_2.0.R 7KB S4 HGRL_RNAhybrid_Analysis.R 7KB find_annotations.R 9KB classes.R 6KB HGRL_nonHybrid_ol.R 1KB inter_gene.R 2KB selectHGRL.R 10KB fastaprep_STAU1specificity.R 9KB handlingHGRL.R 5KB HGRL_RNAcofold_Analysis.R 10KB HGRL_range_analysis.R 8KB HGRL_forgi.R 3KB HGRL_reproducibleRNAduplex.R 13KB handlingIslands.R 6KB import_export.R 4KB stats.R 591B HGRL_RNAfold.R 8KB utility_functions.R 2KB pre_processing RNAmapFunctions_transcripts.R 7KB i0_3_annotation_functios.R 1KB i0_1_preprocessing_data_functions.R 5KB i0_2_generate_fasta_from_gtf.R 7KB RNAmapForTranscripts.R 666B mergeSamHybrid.R 1KB exec run_sweave_temp.py 3KB i1_map_HTSeq.py 4KB run_analysis.py 5KB copyall.sh 2KB run_analysis_part.py 5KB delete_seqfiles.sh 894B README.md 3KB资源评论
