STAU1_hiCLIP资源-CSDN文库

共92个文件

r：34个

py：27个

rnw：12个

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package

STAU1_hiCLIP-master.zip （92个子文件）

folder

STAU1_hiCLIP-master

TODO 0B

folder

inst

folder

Python

hiClipBarcode-LeftRight-READ.py 10KB

shuffle_RNAcoFold.py 2KB

RNAcofoldAnalysis.py 4KB

runRNAfold.py 3KB

test.py 746B

runRNAhybrid.py 2KB

runRibosomeProfilingAnalysis-4.0.py 9KB

runHybridAnalysis_transcripts-2.0.0.py 20KB

folder

parse_RNAhybrid

parse_rnahybrid.py 11KB

folder

.idea

.name 15B

parse_RNAhybrid.iml 575B

parse_rnahybrid_uncumurative.py 9KB

hiClipBarcode-one-READ.py 8KB

selectHybrid-3.1.0.py 7KB

runRNAforgi_parallel.py 3KB

folder

RNAfold_structure

wrapper2_ps_color.txt 120B

add_color.py 4KB

wrapper_ps_color.txt 960B

RNAfold.py 3KB

add_color.py 4KB

runRNAhybrid_parallel.py 3KB

RNAfold.py 3KB

folder

parse_RNAfold

folder

.idea

parse_RNAfold.iml 575B

parse_RNAfold_centroid.py 4KB

parse_RNAfold.py 4KB

repeatEnrichmentFa.py 3KB

swapBarcodes.py 1KB

samToBed-2.0.py 11KB

folder

REE_out

STAU1_nonhybrid_vs_mRNASeq_repenr.std.csv 40KB

readme_REE_out.md 1KB

STAU1_totaliCLIP_vs_mRNASeq_repenr.std.csv 39KB

hnRNPc_iCLIP_vs_mRNASeq_repenr.std.csv 39KB

folder

doc

hiCLIP_data_analysis_4.Rnw 4KB

data_preprocessing_2.Rnw 9KB

hiCLIP_data_analysis_9.Rnw 15KB

hiCLIP_data_analysis_8.Rnw 5KB

hiCLIP_data_analysis_5.Rnw 5KB

hiCLIP_data_analysis_3.Rnw 7KB

.RData 3KB

hiCLIP_data_analysis_2.Rnw 13KB

hiCLIP_data_analysis_6.Rnw 8KB

data_preprocessing_3.Rnw 4KB

hiCLIP_data_analysis_7.Rnw 12KB

hiCLIP_data_analysis_1.Rnw 21KB

data_preprocessing_1.Rnw 14KB

folder

doc

.gitignore 0B

.gitignore 130B

folder

R

mergeSamNonHybrid.R 964B

folder

functions

parse.cts.R 2KB

nonHybrid_functions.R 6KB

count_table_functions.R 5KB

parse_RNAforgi.R 3KB

mergeBedSimple.R 3KB

plot_functions.R 420B

master_table_functions.R 786B

DESeq_functions.R 1KB

forTest.R 578B

folder

visulalization_circos_plot

folder

circoPlots_norm_files

ud_colors.conf 3KB

HiCLIP_mRNA_norm.conf 5KB

fonts.conf 1003B

circoPlots_links_2.0.R 7KB

folder

S4

HGRL_RNAhybrid_Analysis.R 7KB

find_annotations.R 9KB

classes.R 6KB

HGRL_nonHybrid_ol.R 1KB

inter_gene.R 2KB

selectHGRL.R 10KB

fastaprep_STAU1specificity.R 9KB

handlingHGRL.R 5KB

HGRL_RNAcofold_Analysis.R 10KB

HGRL_range_analysis.R 8KB

HGRL_forgi.R 3KB

HGRL_reproducibleRNAduplex.R 13KB

handlingIslands.R 6KB

import_export.R 4KB

stats.R 591B

HGRL_RNAfold.R 8KB

utility_functions.R 2KB

folder

pre_processing

RNAmapFunctions_transcripts.R 7KB

i0_3_annotation_functios.R 1KB

i0_1_preprocessing_data_functions.R 5KB

i0_2_generate_fasta_from_gtf.R 7KB

RNAmapForTranscripts.R 666B

mergeSamHybrid.R 1KB

folder

exec

run_sweave_temp.py 3KB

i1_map_HTSeq.py 4KB

run_analysis.py 5KB

copyall.sh 2KB

run_analysis_part.py 5KB

delete_seqfiles.sh 894B

README.md 3KB

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