ChromSCape:ChromSCape（单细胞染色质景观分析）
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2021-03-04
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ChromSCape:ChromSCape（单细胞染色质景观分析） （177个子文件） 
.BBSoptions 19B introjs.min.css 7KB style.css 738B app.css 392B DESCRIPTION 2KB
curie.jpg 5KB intro.min.js 16KB intro.min.js 16KB app.js 5KB app.js 5KB js.cookie.js 4KB shiny_js_functions.js 2KB ChromSCape.md 6KB README.md 6KB datamatrix_input.md 2KB filtering_parameters.md 1KB differential_analysis.md 1KB most_contributing_features.md 1KB batch_correction.md 1KB intra_inter_correlation.md 888B choose_cluster.md 829B consensus_clustering.md 829B consensus_association_heatmap.md 829B pca_plot.md 829B filter_correlation_distrib.md 599B exclude_region.md 588B correlation_clustering.md 409B subsampling.md 383B output_directory.md 359B distrib_norm_hist.md 358B run_tsne.md 301B tsne_plot.md 102B umap_plot.md 90B NAMESPACE 6KB NEWS 71B
ChromSCape_concept.png 210KB Step3_visualize_cells.png 77KB Step4_1_cluster_cells.png 75KB Step7_GeneSetAnalysis.png 74KB Step6_DA.png 58KB Step5_peak_calling.png 38KB Step4_table_UMAP.png 33KB Step2_filter_normalize.png 31KB Step1_select_import.png 30KB Step1_format_input.png 12KB server.R 113KB preprocessing_filtering_reduction.R 76KB ui.R 40KB diff_analysis_gene_set_enrichment.R 33KB plotting_functions.R 33KB correlation_filtering_clustering.R 26KB support_functions.R 19KB peak_calling.R 19KB test_diff_analysis_gene_set_enrichment.R 11KB test_processing_filtering.R 7KB Module_preprocessing_filtering_and_reduction.R 4KB test_correlation_clustering.R 4KB data.R 3KB test_default_run.R 2KB moreImports.R 958B runApp.R 711B zzz.R 184B testthat.R 64B testthat.R 64B .Rbuildignore 7B subset_bam_call_peaks.Rd 3KB consensus_clustering_scExp.Rd 3KB gene_set_enrichment_analysis_scExp.Rd 3KB CompareedgeRGLM.Rd 2KB differential_analysis_scExp.Rd 2KB peaks_to_bins.Rd 2KB create_scDataset_raw.Rd 2KB scExp.Rd 2KB raw_counts_to_feature_count_files.Rd 2KB filter_correlated_cell_scExp.Rd 2KB choose_cluster_scExp.Rd 1KB create_scExp.Rd 1KB CompareWilcox.Rd 1KB filter_scExp.Rd 1KB correlation_and_hierarchical_clust_scExp.Rd 1KB warning_raw_counts_to_feature_count_files.Rd 1KB import_scExp.Rd 1KB warning_DA.Rd 1KB combine_enrichmentTests.Rd 1KB reduce_dims_scExp.Rd 1KB exclude_features_scExp.Rd 1KB plot_reduced_dim_scExp.Rd 1KB import_count_input_files.Rd 1KB colors_scExp.Rd 1KB warning_filter_correlated_cell_scExp.Rd 1KB inter_correlation_scExp.Rd 1KB feature_annotation_scExp.Rd 1KB count_coverage.Rd 1KB table_enriched_genes_scExp.Rd 959B filter_genes_with_refined_peak_annotation.Rd 957B plot_most_contributing_features.Rd 955B plot_pie_most_contributing_chr.Rd 955B plot_inter_correlation_scExp.Rd 943B index_peaks_barcodes_to_matrix_indexes.Rd 924B rawfile_ToBigWig.Rd 911B共 177 条
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