NGSEPcore:NGSEP是用于分析高通量测序（HTS）读数的集成框架。 NGSEP的主要功能是变体检测器，它允许对具有拷贝...
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NGSEPcore:NGSEP是用于分析高通量测序（HTS）读数的集成框架。 NGSEP的主要功能是变体检测器，它允许对具有拷贝数变异（CNV）的单核苷酸变体（SNV），插入，缺失和基因组区域进行综合发现和基因分型。 （305个子文件） 
buildJar.bat 214B calculateReadposStatsPeaks 252B CHANGELOG 21KB .classpath 549B COPYING 34KB Saccharomyces_cerevisiae.fa 11.79MB Saccharomyces_cerevisiae.gff3 5.4MB .gitignore 24B
yeastDemo_ann_q40_s_fi_I2_noREP_noCNV.vcf.gz 663KB
NGSEPcore_4.1.0.jar 3.05MB NGSEPcore_4.0.3.jar 2.98MB NGSEPcore_4.0.2.jar 2.96MB NGSEPcore_4.0.1.jar 2.45MB NGSEPcore_4.0.0.jar 2.37MB NGSEPcore_3.3.2.jar 2.27MB NGSEPcore_3.3.1.jar 2.18MB NGSEPcore_3.3.0.jar 2.15MB htsjdk-2.22.jar 1.65MB NGSEPcore_3.2.0.jar 1.54MB NGSEPcore_3.1.2.jar 1.47MB NGSEPcore_3.1.1.jar 1.4MB NGSEPcore_3.1.0.jar 1.35MB NGSEPcore_3.0.2.jar 1.31MB NGSEPcore_3.0.1.jar 1.3MB jsci-core.jar 290KB AssemblyGraphStatistics.java 57KB ReadPairAnalyzer.java 51KB ReadAlignment.java 51KB VCFGoldStandardComparator.java 41KB VCFSummaryStatisticsCalculator.java 40KB VCFConverter.java 40KB AssemblyGraph.java 39KB KmerPrefixReadsClusteringAlgorithm.java 38KB SingleSampleVariantsDetector.java 38KB KmerHitsCluster.java 34KB ReadsAligner.java 30KB ConsensusBuilderBidirectionalWithPolishing.java 29KB KmerHitsAssemblyEdgesFinder.java 28KB CNVnatorReadDepthAlgorithm.java 27KB IndelRealignerPileupListener.java 27KB HaplotypeReadsClusterCalculator.java 27KB VCFFileReader.java 26KB VCFRelativeCoordinatesTranslator.java 26KB Transcriptome.java 26KB GenomesAligner.java 26KB FMIndexReadAlignmentAlgorithm.java 26KB MultisampleVariantsDetector.java 25KB VCFWindowIntrogressionAnalysis.java 25KB VCFFilter.java 24KB TillingPopulationSimulator.java 24KB Assembler.java 23KB SingleSampleVariantPileupListener.java 23KB KmersExtractor.java 22KB GFF3TranscriptomeHandler.java 22KB MinimizersTableReadAlignmentAlgorithm.java 22KB LayoutBuilderKruskalPath.java 21KB Transcript.java 20KB SingleIndividualSimulator.java 20KB EWTReadDepthAlgorithm.java 18KB VCFAlleleSharingStatisticsCalculator.java 18KB CommandsDescriptor.java 18KB MinimizersTable.java 17KB CountsHelper.java 17KB CNVseqAlgorithm.java 17KB ReadsDemultiplex.java 16KB ReadsFileErrorsCorrector.java 16KB IndividualSampleVariantsMerge.java 16KB AlignmentsPileupGenerator.java 16KB CalledSNV.java 15KB FMIndexSingleSequence.java 15KB AbstractLimitedSequence.java 15KB VariantDiscoverySNVQAlgorithm.java 15KB GenotypeImputer.java 14KB AssemblyPathReadsAligner.java 14KB ReadDepthDistribution.java 13KB CalledGenomicVariantImpl.java 13KB DiploidGenotypeImputationHMM.java 13KB ReadAlignmentFileReader.java 12KB FragmentsCutBuilder.java 12KB GTF2TranscriptomeHandler.java 12KB DC3SuffixArrayGenerator.java 12KB FMIndex.java 12KB Distribution.java 12KB SingleIndividualHaplotyper.java 12KB GenHapSIHAlgorithm.java 12KB TranscriptomeFilter.java 12KB BiparentalHaploidGoldStandardBuilder.java 12KB HaplotypeBlock.java 12KB VCFFunctionalAnnotator.java 12KB AssemblySequencesRelationshipFilter.java 12KB TranscriptomeAnalyzer.java 12KB VCFRecord.java 11KB VCFComparator.java 11KB AbstractHMM.java 11KB VariableTransitionHMM.java 11KB TillingPoolsIndividualGenotyper.java 11KB HomologClustersCalculator.java 11KB VCFFileHeader.java 11KB BasePairQualityStatisticsCalculator.java 11KB AssemblyGraphFileHandler.java 11KB共 305 条
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