machina:转移和克隆史综合分析框架
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2021-05-20
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machina:转移和克隆史综合分析框架 （4779个子文件） 
A1_5_e=0_01_c0=0_5_af=0_05_mlhtree_1 14KB A1_5_SC_e=0_01_c0=0_5_af=0_05_mlhtree_2 10KB A7_6_e=0_01_c0=0_5_af=0_05_mlhtree_2 14KB A7_6_SC_e=0_01_c0=0_5_af=0_05_mlhtree_1 14KB parse_all_results.bash 1KB process_seed.bash 874B create_pastri_input.bash 705B create_phylowgs_input.bash 611B run_phylowgs.bash 563B run_all.bash 249B process_table.bash 147B get_seeds.bash 67B FindGUROBI.cmake 3KB simulation.cpp 51KB ilppmhsolver.cpp 37KB ilpsolverext.cpp 33KB ilppmhtrsolver.cpp 30KB ilppmhtisolver.cpp 26KB rootedcladisticenumeration.cpp 24KB rootedcladisticnoisyenumeration.cpp 21KB clonetree.cpp 18KB ilpsolver.cpp 17KB msenumeration.cpp 11KB solutiongraph.cpp 11KB pmh_ti.cpp 10KB perfectphylotree.cpp 10KB readmatrix.cpp 9KB ilpbinarizationsolver.cpp 9KB basetree.cpp 8KB rootedcladisticnoisyancestrygraph.cpp 8KB pmh_tr.cpp 7KB simulationmain.cpp 7KB migrationtree.cpp 7KB pmh.cpp 7KB enumeratecanonicalclonetrees.cpp 6KB cluster.cpp 6KB sankoff.cpp 6KB rootedcladisticnoisysparseenumeration.cpp 6KB migrationgraph.cpp 6KB statetree.cpp 6KB enumeratemutationtrees.cpp 5KB frequencymatrix.cpp 5KB gabowmyers.cpp 5KB charactertree.cpp 4KB rootedcladisticancestrygraph.cpp 4KB mpbase.cpp 4KB utils.cpp 4KB ilppmhtrsolvercallback.cpp 4KB ms.cpp 4KB rfmain.cpp 3KB sankofflabeling.cpp 3KB pmh_sankoff.cpp 3KB generatemain.cpp 3KB visualizeclonetreemain.cpp 2KB generatemutationtreesmain.cpp 2KB perfectphylomatrix.cpp 2KB clustermain.cpp 2KB visualizemigrationgraphmain.cpp 2KB solutionset.cpp 2KB readsmain.cpp 2KB perfectphylograph.cpp 2KB realtensor.cpp 2KB downsamplemain.cpp 2KB statsmain.cpp 2KB realmatrix.cpp 1KB solution.cpp 1KB cell.cpp 1KB tensor.cpp 1KB matrix.cpp 1KB generatemigrationtreesmain.cpp 745B basematrix.cpp 398B A22_variants.csv 965KB patient_F.csv 831KB patient_H.csv 553KB patient_A.csv 453KB A22_copynumber.csv 262KB patient_D.csv 221KB patient_C.csv 219KB patient_G.csv 119KB patient_E.csv 28KB patient_B.csv 23KB T_all_seed300_mut10.dot 145KB T_all_seed45_mut10.dot 117KB T_all_seed981_mut10.dot 117KB T_all_seed139_mut10.dot 106KB T_all_seed172_mut10.dot 102KB T_all_seed1070_mut10.dot 100KB T_all_seed9_mut10.dot 98KB T_all_seed30718_mut10.dot 97KB T_all_seed8_mut10.dot 92KB T_all_seed35_mut10.dot 90KB T_all_seed243_mut10.dot 87KB T_all_seed23_mut10.dot 83KB T_all_seed7_mut10.dot 83KB T_all_seed4_mut10.dot 82KB T_all_seed54_mut10.dot 80KB T_all_seed376_mut10.dot 79KB T_all_seed193_mut10.dot 79KB T_all_seed905_mut10.dot 78KB T_seed300_mut10.dot 78KB共 4779 条
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