public-workflows:在公共 SeqWare 工作流程上进行协作的地方
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2021-07-17
20:11:42
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public-workflows-develop.zip （75个子文件） 
public-workflows-develop BDWorld src main java com github seqware 
WorkflowClient.java 9KB
ucsc.hg19.fasta.chr22.mutations.txt.gz 177KB pom.xml 15KB README.md 89B workflow data 
input.txt 13B bin picard-tools-1.92 36B samtools-0.1.19 34B config workflow.ini 2KB metadata.xml 2KB workflow.properties 181B links Homo_sapiens_assembly18.fasta 49B NA19240_HiSeq_100_chr21.rg.bam 50B sample_chr22_hg19.bam 30B dbsnp_137.hg18.excluding_sites_after_129.vcf 64B .gitignore 755B .travis.yml 101B PANCANCER_RUNNING_BWA.md 6KB workflow-DKFZ-bundle src main java io seqware pancancer SampleType.java 70B DKFZBundleWorkflow.java 26KB FileType.java 90B DKFZSNVCallingWorkflow.bak 11KB CreateDownloadJobResult.java 462B pom.xml 13KB README.md 3KB workflow scripts launch_and_monitor_gnos.pl 3KB gnos_upload_data.pl 27KB gnos_upload_vcf.pl 36KB config DKFZ-Workflow-Bundle.EOPC_1010.ini 4KB DKFZ-Workflow-Bundle.ini 4KB metadata.xml 709B workflow.properties 113B links input.txt 99B README 905B workflow-bam-slicer src main java com github seqware WorkflowClient.java 20KB test resources testng.xml 361B calculate.sh 227B tests.json 445B compare.sh 42B LICENSE.txt 34KB pom.xml 17KB README.md 0B workflow scripts gnostest.pem.msg 59B launch_and_monitor_gnos.pl 3KB t test.bam 2KB test.bam.bai 880B extract_missing_mates.pl 1KB gen_missing_mates_bed.pl 526B gnos_upload_data.pl 26KB remove_both_ends_unmapped_reads.pl 325B sam_filter_by_flag.pl 1KB cghub_public.key 140B create_sequence_xml.pl 136B encodeRegions.bed 1KB config workflow.ini 4KB metadata.xml 2KB workflow.properties 205B PANCANCER_AUTOMATED_RUNNING_BWA.md 12KB decider-bam-slicer seqware.setting 2KB decider.cron 748B osdc-decider.cron 382B workflow_decider.pl 24KB LICENSE.txt 34KB cluster.json 305B README.md 94B dockerHelloWorld src main java dockerHelloWorld dockerHelloWorldWorkflow.java 5KB LICENSE.txt 34KB pom.xml 14KB README.md 674B workflow config dockerHelloWorldWorkflow.ini 1KB workflows postgres_image Dockerfile 2KB metadata.xml 716B output.txt 66KB workflow.properties 122B links input.txt 99B README 905B资源评论
