djvdj：一个R包，用于分析AVID-seq数据
需积分: 10 7 浏览量
2021-02-18
02:33:21
上传
评论
收藏 1.26MB ZIP 举报
djvdj-master.zip （82个子文件） 
djvdj-master 
codecov.yml 232B .github .gitignore 7B workflows pkgdown.yaml 2KB pr-commands.yaml 2KB R-CMD-check.yaml 3KB test-coverage.yaml 1KB check-bioc.yml 19KB vignettes tcr.Rmd 15KB djvdj.Rproj 414B NAMESPACE 810B NEWS.md 78B DESCRIPTION 1KB inst extdata outs filtered_contig_annotations.csv 25KB R data.R 323B utils-pipe.R 207B djvdj-package.R 272B plots.R 33KB utils-tidy-eval.R 2KB utils.R 25KB .Rbuildignore 171B LICENSE 46B LICENSE.md 1KB README.md 3KB pkgdown _pkgdown.yml 439B extra.css 51B data tiny_so.rda 111KB tiny_vdj.rda 115KB man dot-split_vdj.Rd 644B dot-set_lims.Rd 480B tiny_so.Rd 316B plot_abundance.Rd 2KB figures 
djvdj-logo-dark-3.png 41KB djvdj-logo-2.png 12KB djvdj-logo.png 13KB README-usage-1.png 55KB dot-convert_char.Rd 419B mutate_vdj.Rd 786B import_vdj.Rd 940B dot-add_aes.Rd 420B dot-set_lvls.Rd 332B vdj_theme.Rd 547B dot-create_bars.Rd 713B dot-create_heatmap.Rd 798B calc_usage.Rd 992B plot_reads.Rd 1KB tidyeval.Rd 2KB plot_features.Rd 1KB calc_similarity.Rd 917B dot-get_vdj_cols.Rd 623B plot_cell_count.Rd 2KB dot-calc_abund.Rd 488B summarize_chains.Rd 1KB calc_diversity.Rd 1021B plot_diversity.Rd 1KB calc_abundance.Rd 831B pipe.Rd 261B plot_similarity.Rd 864B filter_vdj.Rd 1KB tiny_vdj.Rd 351B dot-add_lm.Rd 545B djvdj-package.Rd 907B plot_usage.Rd 1KB tests testthat test_plots.R 9KB test_filter_vdj.R 2KB test_calc_usage.R 432B test_calc_abundance.R 978B test_import_vdj.R 688B test_summarize_chains.R 428B test_mutate_vdj.R 1KB test_calc_similarity.R 2KB test_calc_diversity.R 2KB testthat.R 477B .gitignore 17B data-raw tiny.R 4KB tcr.R 2KB bcr.R 2KB README.Rmd 4KB articles 10x_GEM_vdj_cDNA.png 135KB 10x_vdj_read_layout.png 215KB 10x_GEM_RT.png 130KB 10x_GEM_generation.png 188KB 10x_vdj_workflow.png 262KB资源评论
