SnapATAC:单电池ATAC-seq的分析管道 （152个子文件） 
DESCRIPTION 2KB .DS_Store 6KB
SnapATAC_intro.gif 18.64MB .gitignore 43B LICENSE 34KB README.md 27KB README.md 24KB README.md 9KB experiemnt_timeline.md 5KB README.md 3KB NAMESPACE 5KB
homer_motif.pdf 723KB
homer_motif.png 943KB DARs_all.png 477KB eigs_scatter_plot.png 427KB DARs.png 404KB Visulization.png 391KB eigs_scatter_plot.png 369KB intro.png 367KB PBMC_ATAC_RNA.png 364KB gene_plot.png 359KB DARs.png 305KB 10X_snATAC.png 303KB viz2.png 300KB 10X_brain_5k.png 297KB motif_homer_plot.png 287KB eigs_scatter_plot.png 279KB Visulization_tsne.png 265KB QualityControl.png 251KB QualityControl1.png 250KB QualityControl2.png 239KB chromVAR_2C.png 230KB chromVAR_2B.png 229KB viz.png 217KB gene_exp_plot.png 211KB experiemnt_timeline.png 196KB diff_plot_CD14+_Monocytes.png 192KB Viz_UMAP.png 158KB 10X_sci.png 153KB arc_plot.png 153KB IGV_track.png 120KB motif_var_plot.png 112KB BinCovDist.png 99KB Viz_umap_type.png 96KB Visulization_tree.png 94KB predict_score.png 93KB cluster_tree.png 90KB BinCovDist.png 87KB snap-utilities.R 63KB plottings.R 30KB runMACS.R 11KB runViz.R 9KB runLDA.R 9KB normJaccard.R 9KB runLDM.R 7KB runHomer.R 6KB utilities.R 6KB runDimReduct.R 5KB runKNN.R 5KB runJaccard.R 5KB predictGenePeakPair.R 4KB runSnapAddPmat.R 4KB kgraph-class.R 4KB runLSA.R 4KB createGmat.R 4KB plottings-utilities.R 4KB findDARs.R 4KB snapToSeurat.R 3KB snap-class.R 3KB runChromVAR.R 3KB jaccard-class.R 3KB dimReduct-class.R 3KB runClusters.R 3KB createPmat.R 3KB makeBinary.R 3KB runHarmony.R 2KB runMagic.R 2KB scaleCountMatrix.R 1KB data.R 761B .Rbuildignore 145B runLDA.Rd 2KB runNormJaccard.Rd 2KB plotGene.Rd 2KB runMACSForAll.Rd 2KB runKNN.Rd 2KB plotViz.Rd 2KB runLSA.Rd 2KB runMACS.Rd 2KB filterCells.Rd 2KB runJaccard.Rd 2KB runHomer.Rd 2KB runViz.Rd 1KB snap-class.Rd 1KB findDAR.Rd 1KB runCluster.Rd 1KB plotFeatureSingle.Rd 1KB runDimReduct.Rd 1KB runDiffusionMapsExtension.Rd 1KB runDiffusionMaps.Rd 1KB boxPlotFeature.Rd 1KB共 152 条
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