phageParser：一个从开放遗传数据中提取CRISPR信息的项目资源-CSDN文库

共124个文件

py：48个

txt：19个

csv：8个

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phageParser：一个从开放遗传数据中提取CRISPR信息的项目（124个子文件）

.bowerrc 67B

.coveragerc 79B

CRISPR_locus_positions.csv 205KB

NC_000909.csv 60KB

NC_000853.csv 25KB

crispr_type.csv 20KB

NC_000868.csv 11KB

NC_000854.csv 7KB

phageParser-decision-table-crisprtype.csv 2KB

NC_000912.csv 77B

.editorconfig 198B

.env.example 146B

Mycobacteriophages-All.fasta 54.05MB

NC_000853.fasta 1.8MB

NC_000909.fasta 9KB

velvet-distinct-spacers.fasta 5KB

NC_000853.fasta 5KB

NC_000854.fasta 4KB

NC_000868.fasta 3KB

NC_000912.fasta 174B

NC_020879_phage.gb 407KB

.gitignore 1KB

.gitkeep 0B

demo.html 10KB

index.html 333B

logging.ini 338B

pytest.ini 76B

Spacer Length Analysis.ipynb 169KB

CRISPR Type Analysis.ipynb 87KB

Locus Number of Spacers Analysis.ipynb 66KB

Phaster.ipynb 34KB

Repeat array class demo.ipynb 32KB

Bacteria-phage interactions.ipynb 19KB

ui.js 83KB

bower.json 166B

LICENSE 1KB

Makefile 2KB

README.md 9KB

CODE-OF-CONDUCT.md 3KB

CONTRIBUTING.md 1KB

README.md 472B

cas_per_species.pl 3KB

cas_in_gb.pl 882B

cas_in_gb_v2.pl 836B

dbschema.png 384KB

Open_canvas.png 170KB

phageParser_workflow_2017.png 102KB

CRISPR_locus_diagram.png 27KB

Procfile 28B

mtest_addorganism.py 12KB

populate.py 7KB

fetch.py 7KB

add_organism.py 5KB

models.py 4KB

settings.py 4KB

extract_CRISPRdb.py 4KB

populate_casgenes.py 4KB

crispr_db_parser.py 4KB

serializers.py 3KB

jointable.py 3KB

pfam_db.py 3KB

interactions.py 3KB

addcrisprtypes.py 3KB

cleanPhages.py 3KB

blast.py 3KB

acc2gb.py 2KB

populate_selftargets.py 2KB

blastselftargets.py 2KB

filterByExpect.py 2KB

views.py 2KB

organism_name_update.py 2KB

addRepeatAndSpacersToDB.py 2KB

collect_accessions.py 2KB

prunedict.py 1KB

orderByExpect.py 1KB

genome_extractor.py 1KB

urls.py 1KB

phage.py 1KB

crisprfinder.py 1KB

test_filter_by_expect.py 1KB

anticrisprblast.py 1005B

test_phage.py 988B

test_db.py 871B

manage.py 820B

find_accession.py 621B

test_acc.py 538B

bac_info_parser.py 508B

wsgi.py 394B

getGenomes.py 377B

acc.py 322B

getAccession.py 306B

apps.py 130B

admin.py 65B

__init__.py 1B

__init__.py 0B

__init__.py 0B

__init__.py 0B

NC_000853.results 11KB

create_empty_db.sh 383B

bootstrap.sh 367B

共 124 条

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