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细节增强的matlab代码-P3_public_analysis:P3_public_analysis
共141个文件
csv:37个
r:33个
txt:28个
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2021-05-27
03:05:38
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细节增强的matlab代码P3_public_analysis 此仓库包含生成本文图形中包含的所有图形和图像所需的脚本: Mellis IA等。 扰动面板分析可识别可增强细胞身份定向变化的转录因子。 bioRxiv(2020); 修订版于2021年4月重新提交给Cell Systems。 如有任何疑问,请联系IAM(gmail.com上的ian.mellis)和本文的相应作者,AR(gmail.ar上的arjunrajlab)和RJ(pennmedicine.upenn.edu上的janir)。 为了重现本文中的所有图形和图像: 下载并安装此代码的依赖项: MATLAB_2017a或MATLAB_2019a rajlabimagetools(变更集a2c6ac5) R v3.6.1 R包e1071_1.7-3,gridExtra_2.3,DESeq2_1.24.0,SummarizedExperiment_1.14.1,DelayedArray_0.10.0,BiocParallel_1.18.1,matrixStats_0.57.0,GenomicRanges_1.36.1,Geno
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细节增强的matlab代码-P3_public_analysis:P3_public_analysis (141个子文件)
20170810_Z218164_cpdList_withPositions 61KB
TF_gene_ids.csv 31KB
wellIDpoolTagMapping.csv 3KB
wellIDpoolTagMapping.csv 3KB
wellIDpoolTagMapping.csv 2KB
wellIDpoolTagMapping.csv 2KB
conditionsPositions_tall.csv 1KB
RNAtagTest6_conditionsPositions_tall.csv 1KB
conditionsPositions_tall.csv 1KB
RNAtagTest3_conditionsPositions_stockPositions_tall_d20-100xToDMSO.csv 1KB
RNAtagTest3_conditionsPositions_stockPositions_tall_d20-100xToDMSO.csv 1KB
RNAtagTest3_conditionsPositions_tall_d20-100xToDMSO.csv 1KB
conditionsPositions_tall.csv 1KB
RNAtagTest3_conditionsPositions_tall_d20-100xToDMSO.csv 1KB
conditionsPositions_tall.csv 1KB
conditionsPositions_tall.csv 1KB
conditionsPositions_stockPositions_tall.csv 1KB
conditionsPositions_tall.csv 1KB
RNAtagTest6_conditionsPositions_stockPositions_tall.csv 1KB
RNAtagTest5_conditionsPositions_tall.csv 1KB
conditionsPositions_tall.csv 1KB
RNAtagTest4_conditionsPositions_stockPositions_tall.csv 1KB
conditionsPositions_tall.csv 1KB
conditionsPositions_tall.csv 1KB
RNAtagTest4_conditionsPositions_tall.csv 1KB
RNAtagTest5_conditionsPositions_stockPositions_tall.csv 1014B
RNAtagTest6_conditionsPositions_wide.csv 977B
RNAtagTest3_conditionsPositions_stockPositions_wide_d20-100xToDMSO.csv 927B
RNAtagTest3_conditionsPositions_stockPositions_wide_d20-100xToDMSO.csv 927B
RNAtagTest3_conditionsPositions_wide_d20-100xToDMSO.csv 909B
RNAtagTest3_conditionsPositions_wide_d20-100xToDMSO.csv 909B
test2_conditionsPositions_wide.csv 749B
RNAtagTest6_conditionsPositions_stockPositions_wide.csv 704B
RNAtagTest5_conditionsPositions_wide.csv 704B
RNAtagTest4_conditionsPositions_stockPositions_wide.csv 692B
RNAtagTest4_conditionsPositions_wide.csv 677B
RNAtagTest5_conditionsPositions_stockPositions_wide.csv 629B
markerGeneList.csv 350B
LICENSE 1KB
Tra_1_60_AlkPhos_overlays.m 4KB
iCardTest5_repImgVideo.m 3KB
hiFT4b_wells.m 3KB
hiFT4b_wells_uncomplement.m 3KB
assembleAllImages.m 3KB
IAMHCF27_iCard_FISHIF_images.m 3KB
iCard942_repIF_forSite.m 3KB
iCard942_repIF.m 3KB
IAM942_34_subset_images.m 2KB
hiFT3b_wells.m 2KB
IAM942_30_subset_spotsAndCentroids.m 1KB
IAM11169_30_subset_spotsAndCentroids.m 1KB
IAM11169_28_subset_spotsAndCentroids.m 1KB
IAMHCF30_subset_spotsAndCentroids.m 1KB
IAMHCF22_subset_spotsAndCentroids.m 1KB
RNAtagTest5_repImg.m 1KB
IAMHCF30_subset_spotsAndCentroids.m 1KB
IAM942_34_subset_spotsAndCentroids.m 1KB
extractStackSpotCountsAndMasks.m 1KB
extractSpotsAndCentroids.m 731B
extract4XWellOverlay.m 461B
README.md 4KB
graphing_perturbability.R 163KB
full_DESeq2_perturbability.R 124KB
GTEx_fibsAndiCards_all6_comparePerturbabilityAndSpecificity.R 106KB
graphing_regulons.R 48KB
borkent_reanalysis.R 35KB
hiFT4b.R 32KB
hiFT_pooledScreen2015_reanalysis.R 30KB
cleanCountsAndCalcTPM.R 29KB
plotting_heatmaps.R 21KB
hiFT3b.R 21KB
GTEx_calculateTissueSpecificity.R 20KB
RNAtagUtilities.R 17KB
iPS-CM-KDs_RNAseq_analysis.R 15KB
GO_analysis.R 14KB
hiFT3a_qPCR.R 12KB
hiFT4a.R 12KB
GTEx_cleanCountsAndCalcTPM.R 10KB
transdiff_utilities.R 8KB
DE_metaanalysis.R 8KB
CellNetGTExVsMyData.R 7KB
IAM942_34_subset.R 7KB
IAMimmHCF30.R 5KB
exploratoryDataAnalysis.R 5KB
hiFT3c4c.R 4KB
RNAtagTest3_platePositionRandomization.R 4KB
RNAtagTest3_platePositionRandomization.R 4KB
RNAtagTest6_platePositionRandomization.R 4KB
RNAtagTest5_platePositionRandomization.R 4KB
RNAtagTest4_platePositionRandomization.R 4KB
IAM_169_30.R 4KB
IAMimmHCF_169_30_subset.R 3KB
IAM942_30.R 3KB
drugIDpairStockMatching.R 967B
sessionInfo.rds 79KB
analyzeAll.sh 11KB
move_DESeq2_results.sh 4KB
move_DESeq2_results_iPSCMKDs.sh 730B
hg19gene_idToGeneSymbol.tsv 1.54MB
hg19_lengths_per_gene_id.tsv 1.24MB
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