function [qrs_amp_raw,qrs_i_raw,delay]=pan_tompkin2(ecg,fs) %#codegen
%% function [qrs_amp_raw,qrs_i_raw,delay]=pan_tompkin(ecg,fs)
% Complete implementation of Pan-Tompkins algorithm
%% Inputs
% ecg : raw ecg vector signal 1d signal
% fs : sampling frequency e.g. 200Hz, 400Hz and etc
% gr : flag to plot or not plot (set it 1 to have a plot or set it zero not
% to see any plots
%% Outputs
% qrs_amp_raw : amplitude of R waves amplitudes
% qrs_i_raw : index of R waves
% delay : number of samples which the signal is delayed due to the
% filtering
%% Method
% See Ref and supporting documents on researchgate.
% https://www.researchgate.net/publication/313673153_Matlab_Implementation_of_Pan_Tompkins_ECG_QRS_detector
%% References :
%[1] Sedghamiz. H, "Matlab Implementation of Pan Tompkins ECG QRS
%detector.",2014. (See researchgate)
%[2] PAN.J, TOMPKINS. W.J,"A Real-Time QRS Detection Algorithm" IEEE
%TRANSACTIONS ON BIOMEDICAL ENGINEERING, VOL. BME-32, NO. 3, MARCH 1985.
%% ============== Licensce ========================================== %%
% THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
% "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
% LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
% FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
% OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
% SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED
% TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
% PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
% LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
% NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
% SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
% Author :
% Hooman Sedghamiz, Feb, 2018
% MSc. Biomedical Engineering, Linkoping University
% Email : [email protected]
%% ============ Update History ================== %%
% Feb 2018 :
% 1- Cleaned up the code and added more comments
% 2- Added to BioSigKit Toolbox
%% ================= Now Part of BioSigKit ==================== %%
ecg = ecg(:); % vectorize
%% ======================= Initialize =============================== %
delay = 0;
skip = 0; % becomes one when a T wave is detected
m_selected_RR = 0;
mean_RR = 0;
ser_back = 0;
%% ============ Noise cancelation(Filtering)( 5-15 Hz) =============== %%
if fs == 200
% ------------------ remove the mean of Signal -----------------------%
ecg = ecg - mean(ecg);
%% ==== Low Pass Filter H(z) = ((1 - z^(-6))^2)/(1 - z^(-1))^2 ==== %%
%%It has come to my attention the original filter doesnt achieve 12 Hz
% b = [1 0 0 0 0 0 -2 0 0 0 0 0 1];
% a = [1 -2 1];
% ecg_l = filter(b,a,ecg);
% delay = 6;
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Wn = 12*2/fs;
N = 3; % order of 3 less processing
[a,b] = butter(N,Wn,'low'); % bandpass filtering
ecg_l = filtfilt(a,b,ecg);
ecg_l = ecg_l/ max(abs(ecg_l));
%% ======================= start figure ============================= %%
%% ==== High Pass filter H(z) = (-1+32z^(-16)+z^(-32))/(1+z^(-1)) ==== %%
%%It has come to my attention the original filter doesn achieve 5 Hz
% b = zeros(1,33);
% b(1) = -1; b(17) = 32; b(33) = 1;
% a = [1 1];
% ecg_h = filter(b,a,ecg_l); % Without Delay
% delay = delay + 16;
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Wn = 5*2/fs;
N = 3; % order of 3 less processing
[a,b] = butter(N,Wn,'high'); % bandpass filtering
ecg_h = filtfilt(a,b,ecg_l);
ecg_h = ecg_h/ max(abs(ecg_h));
else
%% bandpass filter for Noise cancelation of other sampling frequencies(Filtering)
f1=5; % cuttoff low frequency to get rid of baseline wander
f2=15; % cuttoff frequency to discard high frequency noise
Wn=[f1 f2]*2/fs; % cutt off based on fs
N = 3; % order of 3 less processing
[a,b] = butter(N,Wn); % bandpass filtering
ecg_h = filtfilt(a,b,ecg);
ecg_h = ecg_h/ max( abs(ecg_h));
end
%% ==================== derivative filter ========================== %%
% ------ H(z) = (1/8T)(-z^(-2) - 2z^(-1) + 2z + z^(2)) --------- %
if fs ~= 200
int_c = (5-1)/(fs*1/40);
b = interp1(1:5,[1 2 0 -2 -1].*(1/8)*fs,1:int_c:5);
else
b = [1 2 0 -2 -1].*(1/8)*fs;
end
ecg_d = filtfilt(b,1,ecg_h);
ecg_d = ecg_d/max(ecg_d);
%% ========== Squaring nonlinearly enhance the dominant peaks ========== %%
ecg_s = ecg_d.^2;
%% ============ Moving average ================== %%
%-------Y(nt) = (1/N)[x(nT-(N - 1)T)+ x(nT - (N - 2)T)+...+x(nT)]---------%
ecg_m = conv(ecg_s ,ones(1 ,round(0.150*fs))/round(0.150*fs));
delay = delay + round(0.150*fs)/2;
%% ===================== Fiducial Marks ============================== %%
% Note : a minimum distance of 40 samples is considered between each R wave
% since in physiological point of view no RR wave can occur in less than
% 200 msec distance
[pks,locs] = findpeaks(ecg_m,'MINPEAKDISTANCE',round(0.2*fs));
%% =================== Initialize Some Other Parameters =============== %%
LLp = length(pks);
% ---------------- Stores QRS wrt Sig and Filtered Sig ------------------%
qrs_c = zeros(1,LLp); % amplitude of R
qrs_i = zeros(1,LLp); % index
qrs_i_raw = zeros(1,LLp); % amplitude of R
qrs_amp_raw= zeros(1,LLp); % Index
% ------------------- Noise Buffers ---------------------------------%
nois_c = zeros(1,LLp);
nois_i = zeros(1,LLp);
% ------------------- Buffers for Signal and Noise ----------------- %
SIGL_buf = zeros(1,LLp);
NOISL_buf = zeros(1,LLp);
SIGL_buf1 = zeros(1,LLp);
NOISL_buf1 = zeros(1,LLp);
THRS_buf1 = zeros(1,LLp);
THRS_buf = zeros(1,LLp);
%% initialize the training phase (2 seconds of the signal) to determine the THR_SIG and THR_NOISE
THR_SIG = max(ecg_m(1:2*fs))*1/3; % 0.25 of the max amplitude
THR_NOISE = mean(ecg_m(1:2*fs))*1/2; % 0.5 of the mean signal is considered to be noise
SIG_LEV= THR_SIG;
NOISE_LEV = THR_NOISE;
%% Initialize bandpath filter threshold(2 seconds of the bandpass signal)
THR_SIG1 = max(ecg_h(1:2*fs))*1/3; % 0.25 of the max amplitude
THR_NOISE1 = mean(ecg_h(1:2*fs))*1/2;
SIG_LEV1 = THR_SIG1; % Signal level in Bandpassed filter
NOISE_LEV1 = THR_NOISE1; % Noise level in Bandpassed filter
%% ============ Thresholding and desicion rule ============= %%
Beat_C = 0; % Raw Beats
Beat_C1 = 0; % Filtered Beats
Noise_Count = 0; % Noise Counter
for i = 1 : LLp
%% ===== locate the corresponding peak in the filtered signal === %%
if locs(i)-round(0.150*fs)>= 1 && locs(i)<= length(ecg_h)
[y_i,x_i] = max(ecg_h(locs(i)-round(0.150*fs):locs(i)));
else
if i == 1
[y_i,x_i] = max(ecg_h(1:locs(i)));
ser_back = 1;
elseif locs(i)>= length(ecg_h)
[y_i,x_i] = max(ecg_h(locs(i)-round(0.150*fs):end));
else
[y_i,x_i] = max(ecg_h(locs(i)-round(0.150*fs):end));
e
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Matlab【信号处理】心电信号PQRST峰值检测工具箱.zip (592个子文件)
pan_tompkin2.m 16KB
compute_fudicial_peaks_live17_c.m 7KB
compute_mean_interval_c.m 4KB
compute_mean_intervals2_c.m 4KB
preprocess_window_ecg.m 3KB
Main_ECG.m 1KB
baseline_remove.m 219B
202m (0).mat 7KB
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