癌症的机器学习分析程序。可以理解为 pandas + sklearn + imblearn 的一个运用代码.zip

Id futime fustat age gender stage TMB StromalScore ImmuneScore ZNF536 ZAN ADGRB3 COL11A1 PLXNA4 DCDC1 HYDIN RYR2 SYNE1 ERBB4 TTN KALRN IL5RA MIA P2RX1 CD1E ADAMTS8 NAPSA B_cells_naive T_cells_CD8 T_cells_follicular_helper Macrophages_M2 Dendritic_cells_resting Mast_cells_resting TCGA-18-3406 371 1 67 MALE Stage IA 3.24 705.0338023 1848.01747 Wild Wild Wild Wild Wild Wild Wild Mutation Wild Wild Wild Wild 0.320023731 0 0.886715627 0.958763787 0.077830224 6.705727234 0.027878815 0.065956015 0.026500175 0.102735735 0.081965518 0.023773161 TCGA-18-3407 136 1 72 MALE Stage IB 0.96 342.2210893 861.972698 Wild Mutation Wild Wild Wild Wild Wild Wild Wild Wild Wild Wild 0.163587408 0.015922559 1.584683681 0.141373245 0.17444056 70.85865215 0.015345993 0.041991958 0.020766774 0.126419322 0.003278027 0.057497701 TCGA-18-3408 2304 1 77 FEMALE Stage IB 1.36 94.56612946 1147.036738 Wild Wild Wild Wild Wild Wild Mutation Wild Wild Wild Wild Wild 0.317764053 0.040207875 0.449031823 0.844894662 0.220249902 40.89359816 0.035173666 0 0.032943787 0.303016143 0.145611627 0.105147563 TCGA-18-3409 3747 0 74 MALE Stage IA 46.6 1439.685594 1279.574514 Mutation Mutation Wild Mutation Mutation Mutation Mutation Mutation Mutation Mutation Mutation Wild 0.218117908 0.067936677 0.262197927 0.623302823 2.027195601 25.20877582 0.01048617 0.010692503 0.016921525 0.256660976 0.149960227 0.055550716 TCGA-18-3410 146 1 81 MALE Stage IIB 3.34 -235.6281675 1922.831486 Wild Wild Wild Wild Wild Wild Wild Wild Wild Wild Mutation Wild 0.104127926 7.48649813 0.639173164 0.559925298 0.019480045 4.605937864 0.0161796 0.186118023 0 0.063462318 0.002197086 0.022837809 TCGA-18-3411 3576 0 63 FEMALE Stage IIIA 5.02 63.25838217 1236.441644 Mutation Mutation Wild Wild Wild Mutation Mutation Wild Mutation Wild Mutation Wild 0.032149035 0.262851358 0.411128909 0.192631529 0.018043133 0.715589325 0.027843929 0.057805147 0.026958816 0.201107132 0.10275943 0.067002045 TCGA-18-3412 345 1 52 MALE Stage IB 2.36 -418.1685297 727.6941636 Wild Wild Wild Wild Wild Wild Wild Wild Wild Wild Wild Wild 0.086284264 0.011803104 0.271382191 0.167675865 0.081669231 8.002932738 0.038920561 0.064923735 0.030285007 0.149596856 0.102240529 0.048728311 TCGA-18-3414 716 1 73 MALE Stage IV 1.58 -196.7492991 1018.302543 Wild Wild Wild Wild Wild Wild Wild Wild Wild Wild Mutation Wild 0.089085243 4.416085055 0.561914179 0.525933813 0.107053835 3.708751085 0.032333062 0.083473687 0.000818008 0.142147159 0.056880329 0.020700898 TCGA-18-3415 2803 1 77 MALE Stage IB 2.82 292.1976115 1424.399932 Wild Wild Wild Wild Wild Wild Wild Mutation Wild Wild Mutation Wild 0.069884255 0.148929958 0.593131378 0.275483241 0.075139988 4.338557179 0.049350178 0.151382542 0 0.122118259 0.062363298 0 TCGA-18-3416 973 1 83 MALE Stage IIB 5.44 -402.7508837 2187.681989 Wild Wild Wild Wild Wild Wild Wild Wild Mutation Wild Mutation Wild 0.044820624 0.056713213 0.738919353 0.593064542 0.027251098 0.261589232 0.01690982 0.423564128 0.034921305 0.144200948 0.018035457 0.010901548 TCGA-18-3417 1097 1 65 MALE Stage IV 4.22 895.5131748 983.8605389 Mutation Wild Wild Wild Wild Wild Wild Wild Mutation Wild Mutation Wild 0.06435249 0.097713137 0.320951966 0.212074026 0.03756148 10.2119369 0.021263173 0.07083186 0.013531472 0.120256407 0.043227297 0 TCGA-18-3421 2645 0 65 MALE Stage IB 5.22 -341.3657779 1330.676172 Wild Wild Mutation Mutation Wild Wild Wild Wild Wild Wild Mutation Wild 0.04824036 0.113941954 0.197821928 0.173428801 0.107935538 36.70200923 0.068011741 0.255332357 0.041218896 0.151082269 0.041452742 0.05989984 TCGA-18-4083 188 1 63 MALE Stage IIB 6.26 42.37692114 666.8631075 Wild Wild Wild Wild Wild Wild Wild Mutation Mutation Wild Wild Wild 0.113183189 0.01468871 1.379865579 0.017389086 0.063522258 6.525544634 0.004903974 0.145655501 0.024412491 0.123810947 0.002266164 0.048425269 TCGA-18-4086 85 1 64 MALE Stage IB 1.9 312.8220555 1183.343947 Wild Wild Wild Wild Wild Wild Wild Wild Wild Wild Wild Wild 0.143317331 0 1.275135169 0.278293098 0.104564933 3.164818784 0.049255615 0.097473125 0 0.188299297 0.040234833 0.084362068 TCGA-18-4721 4694 0 74 MALE Stage IA 2.66 660.5610784 1874.655071 Wild Wild Wild Wild Wild Wild Wild Wild Wild Wild Mutation Wild 0.176524763 0 1.26777684 0.613469627 0.072124201 10.25490075 0 0.025635579 0.033401945 0.133877017 0.048892927 0.093688766 TCGA-18-5592 1519 0 57 MALE Stage IIB 4.72 -700.5911758 298.8522521 Wild Wild Wild Wild Wild Mutation Wild Mutation Mutation Mutation Mutation Mutation 0.055249268 0 0.243602622 0.115145804 0.052578392 0.677375899 0.024468014 0.180181038 0.012902984 0.077881703 0.030076555 0.045731799 TCGA-18-5595 827 1 50 MALE Stage IB 3.4 -1116.685842 -411.3214347 Wild Wild Wild Wild Wild Wild Mutation Wild Wild Wild Wild Wild 0.055203883 0.009634695 0.113927234 0.062732667 0.341659959 27.00077928 0.069576265 0.049957666 0.061487082 0.155113952 0.027787517 0.068442897 TCGA-21-1070 3636 0 60 FEMALE Stage IIIA 8.76 82.69633729 2115.869289 Mutation Wild Wild Wild Wild Wild Mutation Mutation Mutation Wild Mutation Wild 0.316251097 0.134792201 1.040446403 0.518610395 0.23802461 24.24738932 0.007489544 0.160247065 0.047749868 0.167047765 0 0.007850272 TCGA-21-1071 1426 1 67 MALE Stage IB 2.16 79.50060385 915.2154759 Wild Wild Wild Wild Wild Wild Wild Mutation Wild Wild Wild Wild 0.033366356 0.322404974 0.796758325 0.154487894 0.066393368 9.962387001 0.008979036 0.000531301 0.027859125 0.161053101 0.032320194 0.014528152 TCGA-21-1076 1852 0 54 FEMALE Stage IB 3.98 1126.189644 2559.588864 Wild Wild Wild Wild Wild Wild Wild Mutation Wild Wild Mutation Wild 0.194133671 0.091707317 1.454486627 1.775842822 0.555231742 99.23944115 0.008356403 0.046095913 0.024684906 0.136976361 0.000923541 0.051378197 TCGA-21-1077 1058 1 64 MALE Stage IIB 3.22 -49.20019861 946.7737779 Wild Wild Wild Wild Wild Wild Wild Mutation Mutation Wild Mutation Wild 0.392600785 0 0.752765031 0.6821951 0.305539413 25.64874851 0.013345948 0.029026582 0 0.080449686 0.022234431 0 TCGA-21-1079 965 1 71 MALE Stage IIIA 26.86 392.1190907 556.2789692 Wild Mutation Mutation Wild Wild Mutation Mutation Wild Mutation Mutation Mutation Mutation 0.027854774 0.140982752 0.148184591 0.125175788 0.077227253 0.292626807 0 0.028020668 0 0.222972189 0.013077337 0 TCGA-21-1080 3724 0 66 MALE Stage IB 16.8 -721.6259397 761.7114505 Wild Mutation Mutation Mutation Mutation Wild Wild Mutation Mutation Wild Mutation Wild 0.029221185 0.430250577 0.3444714 0.286508214 0.058145184 8.421184841 0.00333739 0.247697985 0.03851581 0.119722636 0.009426808 0.061528401 TCGA-21-1081 284 1 69 MALE Stage IIB 3.28 -45.76756264 -12.43189585 Wild Wild Wild Wild Mutation Wild Wild Wild Mutation Wild Mutation Wild 0.023340349 0.151886144 0.512748577 0.034962847 0.051087653 3.85930019 0.003198489 0.05975356 0.01891799 0.125518412 0.024686274 0 TCGA-21-1082 3644 0 61 MALE Stage IB 5.68 90.4514466 1344.232707 Wild Mutation Wild Wild Wild Wild Wild Mutation Wild Wild Wild Wild 0.503675174 0.191881003 1.490112382 0.365072864 0.26474621 3.5734708 0.004835047 0.12806754 0.047299578 0.092442428 0.056809715 0.039393992 TCGA-21-1083 1315 1 75 MALE Stage IA 12.52 -64.96340239 1172.491589 Wild Mutation Mutation Wild Wild Wild Wild Wild Mutation Mutation Mutation Wild 0.134264623 0.047688436 0.606976488 0.14113872 0.051557915 4.918767171 0.047186175 0.09174138 0.053902652 0.166102147 0.003633658 0.022402346 TCGA-21-5782 962 1 68 FEMALE Stage IB 6.04 97.42722748 819.7481693 Wild Wild Wild Wild Wild Wild Wild Wild Wild Wild Mutation Mutation 0.785836511 0.250544465 1.594459928 0.889813843 0.613980732 24.74730042 0 0.14528158 0.049642913 0.0584702 0.000826692 0.022384241 TCGA-21-5783 2680 1 76 MALE Stage IB 6.7 -107.5442667 -99.26757328 Wild Wild Mutation Wild Wild Wild Wild Mutation Wild Wild Mutation Mutation 0.017152864 0.358118656 0.203177188 0.436802397 0.084474917 5.172802804 0.028067033 0 0.001665499 0.046215164 0.031440337 0.022790745 TCGA-21-5784 1268 0 80 F