%EMD computes Empirical Mode Decomposition
%
%
% Syntax
%
%
% IMF = EMD(X)
% IMF = EMD(X,...,'Option_name',Option_value,...)
% IMF = EMD(X,OPTS)
% [IMF,ORT,NB_ITERATIONS] = EMD(...)
%
%
% Description
%
%
% IMF = EMD(X) where X is a real vector computes the Empirical Mode
% Decomposition [1] of X, resulting in a matrix IMF containing 1 IMF per row, the
% last one being the residue. The default stopping criterion is the one proposed
% in [2]:
%
% at each point, mean_amplitude < THRESHOLD2*envelope_amplitude
% &
% mean of boolean array {(mean_amplitude)/(envelope_amplitude) > THRESHOLD} < TOLERANCE
% &
% |#zeros-#extrema|<=1
%
% where mean_amplitude = abs(envelope_max+envelope_min)/2
% and envelope_amplitude = abs(envelope_max-envelope_min)/2
%
% IMF = EMD(X) where X is a complex vector computes Bivariate Empirical Mode
% Decomposition [3] of X, resulting in a matrix IMF containing 1 IMF per row, the
% last one being the residue. The default stopping criterion is similar to the
% one proposed in [2]:
%
% at each point, mean_amplitude < THRESHOLD2*envelope_amplitude
% &
% mean of boolean array {(mean_amplitude)/(envelope_amplitude) > THRESHOLD} < TOLERANCE
%
% where mean_amplitude and envelope_amplitude have definitions similar to the
% real case
%
% IMF = EMD(X,...,'Option_name',Option_value,...) sets options Option_name to
% the specified Option_value (see Options)
%
% IMF = EMD(X,OPTS) is equivalent to the above syntax provided OPTS is a struct
% object with field names corresponding to option names and field values being the
% associated values
%
% [IMF,ORT,NB_ITERATIONS] = EMD(...) returns an index of orthogonality
% ________
% _ |IMF(i,:).*IMF(j,:)|
% ORT = \ _____________________
% /
% � || X ||�
% i~=j
%
% and the number of iterations to extract each mode in NB_ITERATIONS
%
%
% Options
%
%
% stopping criterion options:
%
% STOP: vector of stopping parameters [THRESHOLD,THRESHOLD2,TOLERANCE]
% if the input vector's length is less than 3, only the first parameters are
% set, the remaining ones taking default values.
% default: [0.05,0.5,0.05]
%
% FIX (int): disable the default stopping criterion and do exactly <FIX>
% number of sifting iterations for each mode
%
% FIX_H (int): disable the default stopping criterion and do <FIX_H> sifting
% iterations with |#zeros-#extrema|<=1 to stop [4]
%
% bivariate/complex EMD options:
%
% COMPLEX_VERSION: selects the algorithm used for complex EMD ([3])
% COMPLEX_VERSION = 1: "algorithm 1"
% COMPLEX_VERSION = 2: "algorithm 2" (default)
%
% NDIRS: number of directions in which envelopes are computed (default 4)
% rem: the actual number of directions (according to [3]) is 2*NDIRS
%
% other options:
%
% T: sampling times (line vector) (default: 1:length(x))
%
% MAXITERATIONS: maximum number of sifting iterations for the computation of each
% mode (default: 2000)
%
% MAXMODES: maximum number of imfs extracted (default: Inf)
%
% DISPLAY: if equals to 1 shows sifting steps with pause
% if equals to 2 shows sifting steps without pause (movie style)
% rem: display is disabled when the input is complex
%
% INTERP: interpolation scheme: 'linear', 'cubic', 'pchip' or 'spline' (default)
% see interp1 documentation for details
%
% MASK: masking signal used to improve the decomposition according to [5]
%
%
% Examples
%
%
%X = rand(1,512);
%
%IMF = emd(X);
%
%IMF = emd(X,'STOP',[0.1,0.5,0.05],'MAXITERATIONS',100);
%
%T=linspace(0,20,1e3);
%X = 2*exp(i*T)+exp(3*i*T)+.5*T;
%IMF = emd(X,'T',T);
%
%OPTIONS.DISLPAY = 1;
%OPTIONS.FIX = 10;
%OPTIONS.MAXMODES = 3;
%[IMF,ORT,NBITS] = emd(X,OPTIONS);
%
%
% References
%
%
% [1] N. E. Huang et al., "The empirical mode decomposition and the
% Hilbert spectrum for non-linear and non stationary time series analysis",
% Proc. Royal Soc. London A, Vol. 454, pp. 903-995, 1998
%
% [2] G. Rilling, P. Flandrin and P. Gon鏰lves
% "On Empirical Mode Decomposition and its algorithms",
% IEEE-EURASIP Workshop on Nonlinear Signal and Image Processing
% NSIP-03, Grado (I), June 2003
%
% [3] G. Rilling, P. Flandrin, P. Gon鏰lves and J. M. Lilly.,
% "Bivariate Empirical Mode Decomposition",
% Signal Processing Letters (submitted)
%
% [4] N. E. Huang et al., "A confidence limit for the Empirical Mode
% Decomposition and Hilbert spectral analysis",
% Proc. Royal Soc. London A, Vol. 459, pp. 2317-2345, 2003
%
% [5] R. Deering and J. F. Kaiser, "The use of a masking signal to improve
% empirical mode decomposition", ICASSP 2005
%
%
% See also
% emd_visu (visualization),
% emdc, emdc_fix (fast implementations of EMD),
% cemdc, cemdc_fix, cemdc2, cemdc2_fix (fast implementations of bivariate EMD),
% hhspectrum (Hilbert-Huang spectrum)
%
%
% G. Rilling, last modification: 3.2007
% gabriel.rilling@ens-lyon.fr
function [imf,ort,nbits] = emd_auto(varargin)
[x,t,sd,sd2,tol,MODE_COMPLEX,ndirs,display_sifting,sdt,sd2t,r,imf,k,nbit,NbIt,MAXITERATIONS,FIXE,FIXE_H,MAXMODES,INTERP,mask] = init(varargin{:});
if display_sifting
fig_h = figure;
end
%main loop : requires at least 3 extrema to proceed
while (~stop_EMD(r,MODE_COMPLEX,ndirs) && (k < MAXMODES+1 || MAXMODES == 0) && ~any(mask))
% current mode
m = r;
% mode at previous iteration
mp = m;
%computation of mean and stopping criterion
if FIXE
[stop_sift,moyenne] = stop_sifting_fixe(t,m,INTERP,MODE_COMPLEX,ndirs);
elseif FIXE_H
stop_count = 0;
[stop_sift,moyenne] = stop_sifting_fixe_h(t,m,INTERP,stop_count,FIXE_H,MODE_COMPLEX,ndirs);
else
[stop_sift,moyenne] = stop_sifting(m,t,sd,sd2,tol,INTERP,MODE_COMPLEX,ndirs);
end
% in case the current mode is so small that machine precision can cause
% spurious extrema to appear
if (max(abs(m))) < (1e-10)*(max(abs(x)))
if ~stop_sift
warning('emd:warning','forced stop of EMD : too small amplitude')
else
disp('forced stop of EMD : too small amplitude')
end
break
end
% sifting loop
while ~stop_sift && nbit<MAXITERATIONS
if(~MODE_COMPLEX && nbit>MAXITERATIONS/5 && mod(nbit,floor(MAXITERATIONS/10))==0 && ~FIXE && nbit > 100)
disp(['mode ',int2str(k),', iteration ',int2str(nbit)])
if exist('s','var')
disp(['stop parameter mean value : ',num2str(s)])
end
[im,iM] = extr(m);
disp([int2str(sum(m(im) > 0)),' minima > 0; ',int2str(sum(m(iM) < 0)),' maxima < 0.'])
end
%sifting
m = m - moyenne;
%computation of mean and stopping criterion
if FIXE
[stop_sift,moyenne] = stop_sifting_fixe(t,m,INTERP,MODE_COMPLEX,ndirs);
elseif FIXE_H
[stop_sift,moyenne,stop_count] = stop_sifting_fixe_h(t,m,INTERP,stop_count,FIXE_H,MODE_COMPLEX,ndirs);
else
[stop_sift,moyenne,s] = stop_sifting(m,t,sd,sd2,tol,INTERP,MODE_COMPLEX,ndirs);
end
% display
if display_sifting && ~MODE_COMPLEX
NBSYM = 2;
[indmin,indmax] = extr(mp);
[tmin,tmax,mmin,mmax] = boundary_conditions(indmin,indmax,t,mp,mp,NBSYM);
envminp = interp1(tmin,mmin,t,INTERP);
envmaxp = interp1(tmax,mmax,t,INTERP);
envmoyp = (envminp+envmaxp)/2;
if FIXE || FIXE_H
display_emd_fixe(t,m,mp,r,envminp,envmaxp,envmoyp,nbit,k,display_sifting)
else
sxp=2*(abs(envmoyp))./(abs(envmaxp-envminp));
sp = mean(sxp);
display_emd(t,m,mp,r,envminp,envmaxp,envmoyp,s,sp,sxp,sdt,sd2t,nbit,k,display_sifting,stop_sift)
end
end
mp = m;
nbit=nbit+1;
NbIt=NbIt+1;
if(nbit==(MAXITERATIONS-1) && ~FIXE && nbit > 100)
if exist('s','var')
warning('emd:warning',['forced stop of sifting : too many iterations... mode ',int2str(k),'. stop parameter mean value : ',num2str(s)])
else
