Analysis of Phylogenetics and Evolution with R
The increasing availability of molecular and genetic databases coupled with the growing power of computers gives biologists opportunities to address new issues, such as the patterns of molecular evolution, and re-assess old ones, such as the role of adaptation in species diversification.In the second edition, the book continues to integrate a wide variety of data analysis methods into a single and flexible interface: the R language. This open source language is available for a wide range of computer systems and has been adopted as a computational environment by many authors of statistical software. Adopting R as a main tool for phylogenetic analyses will ease the workflow in biologists' data analyses, ensure greater scientific repeatability, and enhance the exchange of ideas and methodological developments. The second edition is completely updated, covering the full gamut of R packages for this area that have been introduced to the market since its previous publication five years ago. There is also a new chapter on the simulation of evolutionary data. Graduate students and researchers in evolutionary biology can use this book as a reference for data analyses, whereas researchers in bioinformatics interested in evolutionary analyses will learn how to implement these methods in R. The book starts with a presentation of different R packages and gives a short introduction to R for phylogeneticists unfamiliar with this language. The basic phylogenetic topics are covered: manipulation of phylogenetic data, phylogeny estimation, tree drawing, phylogenetic comparative methods, and estimation of ancestral characters. The chapter on tree drawing uses R's powerful graphical environment. A section deals with the analysis of diversification with phylogenies, one of the author's favorite research topics. The last chapter is devoted to the development of phylogenetic methods with R and interfaces with other languages (C and C++). Some exercises conclude these chapters.
- 粉丝: 7
- 资源: 40
- 我的内容管理 展开
- 我的资源 快来上传第一个资源
- 我的收益 登录查看自己的收益
- 我的积分 登录查看自己的积分
- 我的C币 登录后查看C币余额
- 我的收藏
- 我的下载
- 下载帮助
最新资源
- Screenshot_20240427_031602.jpg
- 网页PDF_2024年04月26日 23-46-14_QQ浏览器网页保存_QQ浏览器转格式(6).docx
- 直接插入排序,冒泡排序,直接选择排序.zip
- 在排序2的基础上,再次对快排进行优化,其次增加快排非递归,归并排序,归并排序非递归版.zip
- 实现了7种排序算法.三种复杂度排序.三种nlogn复杂度排序(堆排序,归并排序,快速排序)一种线性复杂度的排序.zip
- 冒泡排序 直接选择排序 直接插入排序 随机快速排序 归并排序 堆排序.zip
- 课设-内部排序算法比较 包括冒泡排序、直接插入排序、简单选择排序、快速排序、希尔排序、归并排序和堆排序.zip
- Python排序算法.zip
- C语言实现直接插入排序、希尔排序、选择排序、冒泡排序、堆排序、快速排序、归并排序、计数排序,并带图详解.zip
- 常用工具集参考用于图像等数据处理