分析CAR-T细胞治疗过程的软件工具-集成了光学相位显微镜(OPM)重建算法、深度学习分割算法和细胞毒性定量算法.zip

If you use this code for your research, please cite https://www.biorxiv.org/content/10.1101/2024.03.23.586380v1 Partial segmentation depends on https://github.com/wolny/pytorch-3dunet <img width="505" alt="6d18a2dbac05c00e111f8e4647b4125" src="https://github.com/user-attachments/assets/5330cc02-f2be-4a49-bd51-e57f774cf3bf"> The software integrates a OPM reconstruction algorithm, a deep learning segmentation algorithm, and an algorithm for quantifying cytotoxic processes. The OPM raw data files should be organised in the format "root_folder/v_groupnum1_groupnum2_slice_step_xxx/H_xxx/" and the software can be run by populating the system parameters on the software operation panel.