****** DDE-BIFTOOL v. 3.1.1 ******
* Installation
* Reference_and_documentation
* Contributors
* Citation
* Copyright,_License_and_No-warranty_notice
===============================================================================
***** Installation *****
* Unzipping ddebiftool.zip creates a "dde_biftool" directory (named
"dde_biftool") containing the subfolders:
o ddebiftool (basic DDE-BIFTOOL routines),
o demos (example scripts illustrating the use of DDE-BIFTOOL),
o ddebiftool_extra_psol (extension for local bifurcations of periodic
orbits),
o ddebiftool_extra_nmfm (extension for normal form coefficient
computations at local bifurcations of equilibria in DDEs with
constant delay),
o ddebiftool_utilities (auxiliary functions),
o ddebiftool_extra_rotsym (extension for systems with rotational
symmetry).
o external_tools (support scripts, such as a Mathematica and a Maple
script for generating derivative functions used in DDE-BIFTOOL).
* To test the tutorial demo "neuron" (the instructions below assume
familiarity with Matlab or octave):
o Start Matlab (version 7.0 or higher) or octave (tested with version
3.8.1)
o Inside Matlab or octave change working directory to demos/neuron
using the "cd" command
o Execute script "rundemo" to perform all steps of the tutorial demo
o Compare the outputs on screen and in figure windows with the
published output in demos/neuron/html/demo1.html.
===============================================================================
***** Reference and documentation *****
Current download URL on Sourceforge (including access to versions from 3.1
onward)
https://sourceforge.net/projects/ddebiftool/
URL of original DDE-BIFTOOL website (including access to versions up to 3.0)
http://twr.cs.kuleuven.be/research/software/delay/ddebiftool.shtml
Contact (bug reports, questions etc)
https://sourceforge.net/projects/ddebiftool/support
Manual for version 2.0x
K. Engelborghs, T. Luzyanina, G. Samaey. DDE-BIFTOOL v. 2.00: a Matlab
package for bifurcation analysis of delay differential equations.
Technical Report TW-330
Manual for current version
manual.pdf (v. 3.1.1), stored on arxiv: arxiv.org/abs/1406.7144
Changes for v. 2.03
Addendum_Manual_DDE-BIFTOOL_2_03.pdf (by K. Verheyden)
Changes for v. 3.0
Changes-v3.pdf (by J. Sieber)
Description of extensions ddebiftool_extra_psol and ddebiftool_extra_rotsym
Extra_psol_extension.pdf (by J. Sieber)
Description of the extention ddebiftool_extra_nmfm
nmfm_extension_desctiption.pdf (by M. Bosschaert, B. Wage, Yu.A.
Kuznetsov)
Overview of documented demos
demos/index.html
===============================================================================
***** Contributors *****
** Original code and documentation (v. 2.03) **
K. Engelborghs, T. Luzyanina, G. Samaey. D. Roose, K. Verheyden
K.U.Leuven
Department of Computer Science
Celestijnenlaan 200A
B-3001 Leuven
Belgium
** Revision for v. 3.0, 3.1.x **
** Bifurcations of periodic orbits **
J. Sieber
College for Engineering, Mathematics and Physical Sciences, University of
Exeter (UK),
emps.exeter.ac.uk/mathematics/staff/js543
** Normal form coefficients for bifurcations of equilibria **
S. Janssens, B. Wage, M. Bosschaert, Yu.A. Kuznetsov
Utrecht University
Department of Mathematics
Budapestlaan 6
3584 CD Utrecht
The Netherlands
www.staff.science.uu.nl/~kouzn101/_((Y.A._Kuznetsov)
** Automatic generation of right-hand sides and derivatives in Mathematica **
D. Pieroux
Universite Libre de Bruxelles (ULB, Belgium)
** Demo for phase oscillator **
A. Yeldesbay
Potsdam University (Germany)
===============================================================================
***** Citation *****
Scientific publications, for which the package DDE-BIFTOOL has been used, shall
mention usage of the package DDE-BIFTOOL, and shall cite the following
publications to ensure proper attribution and reproducibility:
* K. Engelborghs, T. Luzyanina, and D. Roose, Numerical bifurcation
analysis of delay differential equations using DDE-BIFTOOL, ACM Trans.
Math. Softw. 28 (1), pp. 1-21, 2002.
* K. Engelborghs, T. Luzyanina, G. Samaey. DDE-BIFTOOL v. 2.00: a Matlab
package for bifurcation analysis of delay differential equations.
Technical Report TW-330, Department of Computer Science, K.U.Leuven,
Leuven, Belgium, 2001.
* [Manual of current version, permanent link]
J. Sieber, K. Engelborghs, T. Luzyanina, G. Samaey, D. Roose: DDE-BIFTOOL
Manual - Bifurcation analysis of delay differential equations. arxiv.org/
abs/1406.7144.
* [Theoretical background for computation of normal form coefficients,
permanent link]
Sebastiaan Janssens: On a Normalization Technique for Codimension Two
Bifurcations of Equilibria of Delay Differential Equations. Master
Thesis, Utrecht University (NL), supervised by Yu.A. Kuznetsov and O.
Diekmann, dspace.library.uu.nl/handle/1874/312252, 2010.
* [Normal form implementation for Hopf-related cases, permanent link]
Bram Wage: Normal form computations for Delay Differential Equations in
DDE-BIFTOOL. Master Thesis, Utrecht University (NL), supervised by Y.A.
Kuznetsov, dspace.library.uu.nl/handle/1874/296912, 2014.
M. M. Bosschaert: Switching from codimension 2 bifurcations of equilibria
in delay differential equations. Master Thesis, Utrecht University (NL),
supervised by Y.A. Kuznetsov, dspace.library.uu.nl/handle/1874/334792,
2016.
===============================================================================
***** Copyright, License and No-warranty Notice *****
BSD 2-Clause license
Copyright (c) 2017, K.U. Leuven, Department of Computer Science, K.
Engelborghs, T. Luzyanina, G. Samaey. D. Roose, K. Verheyden, J. Sieber, B.
Wage, D. Pieroux
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation and/
or other materials provided with the distribution.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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DDE-BIFTOOL:时滞微分方程的分叉分析-开源
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DDE-BIFTOOL是一组例程,用于执行在Matlab或Octave [2]中运行的时滞微分方程的数值分叉分析。 它最初是由比利时鲁汶大学(KU Leuven)的科恩·恩格尔博格(Koen Engelborghs)创建的。 [1]教程演示显示了说明性演示的输出。 文档链接,贡献者列表和当前维护者列表。 KU Leuven [1]上的原始DDE-BIFTOOL页面存储版本高达3.0及其文档。 [1] [2] 进一步的教程(由M Bosschaert撰写)位于(pdf文件)。
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DDE-BIFTOOL:时滞微分方程的分叉分析-开源 (694个子文件)
.directory 121B
demo1_simple.html 42KB
rotsym_demo.html 39KB
HollingTanner_demo.html 36KB
hom_demo.html 35KB
nmfm_demo.html 27KB
humphriesetal_demo.html 27KB
demo1_hopf.html 24KB
demo1_normalforms.html 24KB
MackeyGlass_demo.html 23KB
sd_demo_psol.html 21KB
minimal_demo_stst_psol.html 21KB
demo1_stst.html 19KB
demo1_psol.html 19KB
nested_demo.html 18KB
SetupMWFold.html 18KB
SetupPOfold.html 17KB
demo1_POfold.html 17KB
minimal_demo_extra_psol.html 16KB
sd_demo_stst.html 15KB
demo1_funcs.html 15KB
SetupTorusBifurcation.html 14KB
phase_oscillator.html 14KB
GetStability.html 14KB
sd_dtau.html 14KB
SetupRWFold.html 14KB
neuron_sys_deri.html 14KB
minimal_demo_extra_nmfm.html 12KB
demo1_hcli.html 12KB
cusp_demo.html 12KB
sd_demo_funcs.html 11KB
set_rotfuncs.html 11KB
SetupPsol.html 10KB
br_insert.html 10KB
SetupFold.html 10KB
sd_demo_hopf.html 10KB
minimal_demo_plot_2dbif.html 9KB
SetupStstBifurcation.html 9KB
demo1.html 9KB
Readme.html 9KB
sd_demo.html 9KB
SetupStst.html 8KB
SetupHopf.html 8KB
index.html 8KB
DoublePsol.html 8KB
minimal_demo.html 8KB
index.html 6KB
sd_tau.html 5KB
index.html 5KB
SetupMWTorusBifurcation.html 5KB
SetupMWPeriodDoubling.html 5KB
SetupPeriodDoubling.html 5KB
SetupRWHopf.html 5KB
index.html 4KB
index.html 3KB
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Readme.html 961B
index.html 957B
index.html 870B
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index.html 509B
hcli_jac.m 22KB
br_bifdet_old.m 18KB
HollingTanner_mfderi.m 17KB
br_bifdet.m 16KB
p_correc.m 15KB
demo1_simple.m 15KB
rotsym_demo.m 12KB
hom_demo.m 12KB
HollingTanner_demo.m 11KB
psol_jac.m 10KB
sd_deri.m 9KB
nmfm_demo.m 9KB
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