computational-genomics:天普大学的计算基因组学课程-Jody Hey教授
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2021-03-22
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computational-genomics-master.zip （98个子文件） 
computational-genomics-master 
README.md 158B Module 3 - Barcoding zgrep and Dotplot Part_1_zgrep 
chr21_CM000511.1.16741801.fasta.gz 30KB chr21_CM000482.1.16741801.fasta.gz 30KB
BASHcommands.txt 745B Part_3_Human_Genome_Dotplot human_tbx20_mRNA.fasta 2KB tbx20_genomic_and_mRNA.jpeg 44KB human_genomic_tbx20.fasta 52KB Part_2_Barcoding week3_seqs_bc.TGCTCGCTGA.fq 230KB week3_seqs_bc.ATGAGATCTT.fq 236KB week3part2.py 975B week3_seqs_bc.TATCCAGCCA.fq 237KB week3_seqs_bc.CTTGTTACTA.fq 244KB week3_seqs_bc.CCTCACCAGC.fq 237KB week3_seqs_bc.fq 2.55MB week3_seqs_bc.TGAAAATCTT.fq 237KB week3_seqs_bc.AAGGCACAAG.fq 232KB week3_seqs_bc.AGGCAGGCAG.fq 235KB week3_seqs_bc.GTACCGCCGT.fq 240KB week3_seqs_bc.AGCTCATTTC.fq 236KB Module 1 - BASH Commands and fasta-fastq Formats linuxBashCommand.txt 1KB bonusOutput.txt 71.17MB output-for-brca.example.illumina.0.1.fastq.txt 191B week1bonus.py 3KB GRCH38p2_chr22.fasta.gz 10.76MB brca.example.illumina.0.1.fastq 8.01MB GRCH38p2_chr22.fasta 49.16MB week1part2.py 4KB output.txt 191B output-for-GRCH38p2_chr22.fasta.gz.txt 169B Module 2 - fastq Simulation and Fastqc chr21_CM000482.1.fasta 32.39MB chr21_CM000511.1.fasta 32.39MB Bonus week2bonus.py 1KB 0.0001-error-bonus-chr21_CM000482.1.16741801.fasta 99KB 0.0001-error-bonus-chr21_CM000511.1.16741801.fasta 99KB gitlog.txt 2KB fastqSimulation.py 3KB
week2assignment.docx 16KB samtools.py 550B Module 4 - Assemble a Portion of a Diploid Genome dualpaired21 stats.txt 7KB LastGraph 822KB
dpaired21.png 30KB gep.jpeg 130KB contigs.fa 103KB single51 single51.png 75KB stats.txt 6KB LastGraph 201KB gep.jpeg 132KB contigs.fa 107KB Bonus results.txt 318B module4bonus.py 2KB commands.txt 2KB paired51 stats.txt 408B paired51.png 28KB LastGraph 432KB gep.jpeg 132KB contigs.fa 100KB paired21 stats.txt 6KB paired21.png 42KB LastGraph 499KB gep.jpeg 132KB contigs.fa 102KB dualpaired51 dpaired51.png 24KB stats.txt 416B LastGraph 683KB gep.jpeg 133KB contigs.fa 100KB
Week 4 Summary.pdf 244KB single21 single21.png 122KB stats.txt 59KB LastGraph 246KB gep.jpeg 132KB contigs.fa 121KB Module 7 - RNAseq genes.fpkm_tracking 174KB history.txt 229B RNAseq_experiment.pdf 10KB igv_bam_gtf.png 155KB chr22_brain_FPKM.png 25KB Module_7_Part_1.pdf 84KB fpkm_histogram.py 453B Module 5 - bowtie samtools bedtools 2_sorted.png 14KB history.txt 2KB hist.py 1KB 2_bedtools.png 26KB 5_bedtools.png 25KB 1_bedtools.png 25KB 0_sorted.png 32KB readme.md 88B ComputationalGenomics-Week5Summary.pdf 163KB 0_bedtools.png 25KB 5_sorted.png 6KB 1_sorted.png 12KB Module 6 - vcf HG00277.exome.22.variants.10000.vcf 1017KB history.txt 2KB MLs_HG00277.exome.22.out 9.25MB interesting_variation.png 89KB chr13_1000000_sorted.vcf 110KB MLs_chr13_1000000.out 11.97MB getgenotypes.py 8KB资源评论
