haystack_bio:草垛
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2021-04-28
08:39:40
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haystack_bio:草垛 （100个子文件） 
K562H3k27ac_chr21.bam 11.54MB Gm12878H3k27ac_chr21.bam 8.94MB NhlfH3k27ac_chr21.bam 8.09MB Hepg2H3k27ac_chr21.bam 5.54MB hg38_genes.bed 7.96MB hg19_genes.bed 6.47MB mm10_genes.bed 4.82MB mm9_genes.bed 4.81MB bosTau7_genes.bed 2.05MB galGal4_genes.bed 959KB hg19_blacklisted_regions.bed 35KB bosTau7_genes_id_to_names 272KB logo.css 1KB Dockerfile 3KB .dockerignore 31B galGal4_genes_id_to_names 127KB .gitignore 1KB hg19_genes_id_to_names 899KB hg38_genes_id_to_names 987KB
get_data.html 27.25MB get_data.nb.html 765KB report_template.html 22KB MANIFEST.in 125B haystack_jypyter_notebook.ipynb 104KB MAP_MOTIFS_TO_GENES.ipynb 28KB
PeakAnnotator.jar 160KB LICENSE 34KB README.md 45KB JASPAR_CORE_REDUNDANT_2016_vertebrates.meme 424KB JASPAR_CORE_2016_vertebrates.meme 345KB JASPAR_CORE_2014_vertebrates.meme 141KB FACTORBOOK.meme 82KB mm10_genes_id_to_names 601KB mm9_genes_id_to_names 601KB
H1hesc_motif_Pou5f1_Sox2(MA0142.1)_gene_SOX2.pdf 18KB HSMM_motif_Myod1(MA0499.1)_gene_MYOD1.pdf 18KB HEPG2_motif_CEBPA(MA0102.3)_gene_CEBPA.pdf 18KB GM12878_motif_IRF2(MA0051.1)_gene_IRF2.pdf 17KB NHLF_motif_FOS(MA0476.1)_gene_FOS.pdf 17KB K562_motif_Gata1(MA0035.3)_gene_GATA1.pdf 17KB
haystack_logo.png 351KB motif.png 307KB 6genes.png 82KB pipeline.png 77KB genome_map_h3k27ac_chr3.png 75KB E003_H1_Cell_motif_Pou5f1_Sox2(MA0142.1)_gene_SOX2.png 52KB sox2_zoom_h3k27ac.png 39KB docker_settings.png 37KB noise.png 32KB hotspots.png 10KB put_genomes_here 0B find_hotspots.py 45KB bioutilities.py 45KB external.py 44KB find_motifs.py 38KB run_pipeline.py 14KB generate_tf_activity_plane.py 13KB haystack_common.py 9KB setup.py 2KB download_genome.py 676B haystack_download_genome.py 139B haystack_pipeline.py 136B haystack_motifs.py 135B haystack_hotspots.py 127B __init__.py 0B jobarray.R 1KB get_data.Rmd 7KB manual_build.sh 3KB docker_test_bigwig.sh 598B docker_test_bam.sh 564B travis_before_install.sh 521B travis_before_install.sh 521B build.sh 95B
hotspots.svg 1020KB 6genes.svg 430KB
NHLF_genes.txt 333KB GM12878_genes.txt 330KB HEPG2_genes.txt 329KB K562_genes.txt 328KB JASPAR_CORE_REDUNDANT_2016_vertebrates_mapped_to_gene_human_mouse.txt 44KB JASPAR_CORE_2016_vertebrates_mapped_to_gene_human_mouse.txt 35KB JASPAR_CORE_2014_vertebrates_mapped_to_chicken.txt 24KB JASPAR_CORE_2014_vertebrates_mapped_to_cow.txt 8KB sample_names_H3K27me3.txt 7KB sample_names_H3K27ac.txt 7KB sample_names_H3K4me3.txt 7KB sample_names_methylation.txt 5KB H3K27me3_urls.txt 5KB H3K27ac_urls.txt 5KB H3K4me3_urls.txt 5KB FACTORBOOK_mapped_to_gene_human_mouse.txt 4KB sample_names_DNase.txt 4KB methylation_urls.txt 4KB DNase_urls.txt 3KB EG.name.txt 2KB commands.txt 362B samples_names.txt 186B JASPAR_CORE_2014_vertebrates_mapped_to_gene_human_mouse.txt 0B meta.yaml 1KB .travis.yml 1KB共 100 条
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