protein-localization:使用具有线性注意机制的Transformer蛋白嵌入对蛋白质亚细胞位置进行SOTA重新...
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2021-04-06
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protein-localization:使用具有线性注意机制的Transformer蛋白嵌入对蛋白质亚细胞位置进行SOTA重新预测 （126个子文件） 
.gitignore 100B embedding_similarity.ipynb 12KB umap_plots.ipynb 5KB README.md 2KB
.architecture.png 1.59MB .accuracy.png 225KB solver.py 16KB preprocess.py 13KB general.py 12KB train.py 7KB extract_embeddings.py 6KB embeddings_localization_dataset.py 6KB tmp2.py 6KB create_plots.py 6KB create_plots_mcc.py 6KB inference.py 5KB deep_loc.py 4KB explore_embeddings.py 4KB tmp.py 4KB loss_functions.py 3KB logsparsesoftmax.py 3KB transforms.py 3KB multiple_att3.py 3KB multi_head_attention.py 3KB tmp1.py 3KB light_attention_metadata.py 3KB convs_strange_attend_concat.py 3KB light_attention.py 3KB first_attention_cat.py 3KB bahdanau_attention.py 3KB light_attention_pssm.py 3KB tmp3.py 2KB logsparsemax.py 2KB conv_max_avg_pool_late_concat.py 2KB lstm_convs.py 2KB sparsesoftmax.py 2KB logsoftmax.py 2KB multiple_att.py 2KB data_stats.py 2KB light_attention_nonlin.py 2KB convs_attend_concat.py 2KB conv_max_avg_pool_middle_concat.py 2KB light_attention_max_ablation.py 2KB multi_conv_max_avg_pool.py 2KB light_attention_softmax_ablation.py 2KB attention_big_dot.py 2KB parse_pssm_txt_file.py 2KB lstm_conv.py 2KB lstm_conv.py 2KB first_attention_batchnorm.py 2KB conv_max_avg_pool_small.py 2KB adaptive_pooling.py 2KB attention_dot.py 2KB sparsemax.py 2KB convs_concat_strange_attend.py 2KB first_attention_dropout.py 2KB first_attention_avg.py 2KB logmax.py 2KB first_attention.py 2KB conv_max_self_attention.py 2KB first_attention_no_dropout.py 2KB first_attention_sigmoid.py 2KB attention5.py 2KB attention3.py 2KB attention2.py 2KB conv_self_attention.py 2KB ffn.py 2KB attention4.py 2KB conv_max_avg_smart_pool.py 2KB second_attention.py 2KB ffn_late_concat.py 2KB self_attention_2_layer.py 2KB convs_max_avg_pool.py 1KB conv_max_avg_pool_conv.py 1KB self_attention_max_avg_pool.py 1KB reduced_conv.py 1KB convs_avg_poolv2.py 1KB conv_max_avg_skip_pool.py 1KB third_attention.py 1KB conv_max_avg_pool_cls.py 1KB multi_conv_max_avg_pool_sigmoid.py 1KB conv_attention.py 1KB conv_max_avg_pool.py 1KB conv_max_avg_pool_no_batchnorm.py 1KB convs_avg_pool.py 1KB self_attention.py 1KB conv_tail_pool.py 1KB conv_avg_smart_pool.py 1KB multiple_conv_avg_pool.py 1KB tmp4.py 1KB conv_avg_pool.py 1KB conv_max_pool.py 1KB conv_max_avg_pool_sigmoid.py 1KB conv_avg_pool_sigmoid.py 1KB __init__.py 622B __init__.py 622B 1.yaml 1KB solubility.yaml 1KB localizationT5_Uniref.yaml 1KB solubility_ProtBert.yaml 1KB共 126 条
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