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clipper:识别CLIP-seq峰的工具
共187个文件
bed:112个
py:18个
gff:17个
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2021-05-09
14:21:41
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CLIPper-CLIP峰富集识别 一种检测CLIP-seq峰的工具。 请访问我们的Wiki页面以了解有关Clipper用法的更多信息: : 安装 # recreate PYTHON3 conda environment cd clipper conda env create -f environment3.yml conda activate clipper3 pip install . 替代安装 感谢@rekado使Clipper在GNU Guix上可用guix install clipper 我们注意到某些平台上的安装可能会失败。 Dockerized的clipper在的eclip存储库中。 命令行用法 # shows all the options clipper -h # minimal command clipper -b YOUR_BAM_FILE.bam -o YO
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clipper:识别CLIP-seq峰的工具 (187个子文件)
transcriptome_filter.sort.bam.bai 99KB
allup_test.bam.bai 44KB
indexed_test.bam.bai 928B
allup_test.bam 81KB
transcriptome_filter.sort.bam 9KB
transcriptome_cutoff.bam 9KB
rmdup_test.bam 9KB
allup_test.rmdup.bam 9KB
not_indexed_test.bam 4KB
indexed_test.bam 4KB
hg19_genes.bed 22.54MB
GRCh38_three_prime_ends.bed 20.34MB
GRCh38_v24_three_prime_ends.bed 20.34MB
GRCh38_v24_five_prime_ends.bed 20.18MB
GRCh38_five_prime_ends.bed 20.18MB
hg19_v19_three_prime_ends.bed 19.93MB
hg19_v19_five_prime_ends.bed 19.75MB
GRCh38_v24_proxintron500.bed 18.52MB
GRCh38_proxintron500.bed 18.52MB
hg19_v19_proxintron500.bed 18.19MB
hg19_proxintron500.bed 18.14MB
hg19_three_prime_ends.bed 17.06MB
hg19_five_prime_ends.bed 16.92MB
mm9_proxintron500.bed 15.19MB
GRCh38_v29e_exons.bed 14.92MB
GRCh38_v29_exons.bed 14.89MB
GRCh38_pU6_cas9_exons.bed 14.59MB
GRCh38_exons.bed 14.59MB
GRCh38_v24_exons.bed 14.59MB
hg19_VSV_exons.bed 14.3MB
hg19_v19_exons.bed 14.3MB
hg19_exons.bed 14.23MB
mm10_vM15_VSV_exons.bed 13.35MB
mm9_three_prime_ends.bed 12.87MB
mm9_five_prime_ends.bed 12.79MB
mm10_exons.bed 11.98MB
mm9_exons.bed 11.54MB
rn6_exons.bed 10.19MB
mm9_cds.bed 9.6MB
GRCh38_v24_cds.bed 9.48MB
GRCh38_cds.bed 9.48MB
hg19_v19_cds.bed 9.41MB
hg19_cds.bed 9.39MB
GRCh38_introns.bed 9.06MB
GRCh38_v24_introns.bed 9.06MB
hg19_introns.bed 8.9MB
hg19_v19_introns.bed 8.89MB
mm9_introns.bed 8.68MB
ChlSab2_exons.bed 8.16MB
ChlSab2_Sars_exons.bed 8.08MB
GRCh38_v24_transcription_start_sites.bed 7.83MB
GRCh38_transcription_start_sites.bed 7.83MB
GRCh38_poly_a_sites.bed 7.73MB
GRCh38_v24_poly_a_sites.bed 7.73MB
hg19_v19_transcription_start_sites.bed 7.62MB
hg19_transcription_start_sites.bed 7.55MB
hg19_v19_poly_a_sites.bed 7.53MB
hg19_poly_a_sites.bed 7.46MB
ce10_exons.mrg.bed 5.82MB
GRCh38_distintron500.bed 5.72MB
GRCh38_v24_distintron500.bed 5.72MB
hg19_v19_distintron500.bed 5.63MB
hg19_distintron500.bed 5.63MB
ce10_five_prime_ends.bed 5.47MB
mm9_distintron500.bed 5.07MB
ce10_exons.bed 4.24MB
ce10_cds.bed 4.17MB
mm9_transcription_start_sites.bed 3.97MB
mm9_poly_a_sites.bed 3.88MB
ce10_three_prime_ends.bed 3.81MB
ce10_proxintron500.bed 3.68MB
ce10_introns.bed 3.56MB
GRCh38_v24_three_prime_utrs.bed 3.07MB
GRCh38_three_prime_utrs.bed 3.07MB
hg19_v19_three_prime_utrs.bed 3.06MB
hg19_three_prime_utrs.bed 3.02MB
GRCh38_pU6_cas9_genes.bed 2.67MB
GRCh38_genes.bed 2.67MB
GRCh38_v24_genes.bed 2.67MB
hg19_v19_five_prime_utrs.bed 2.63MB
hg19_five_prime_utrs.bed 2.62MB
GRCh38_v29e_genes.bed 2.58MB
GRCh38_v29_genes.bed 2.58MB
hg19_v19_genes.bed 2.53MB
hg19_genes.bed 2.51MB
GRCh38_five_prime_utrs.bed 2.49MB
GRCh38_v24_five_prime_utrs.bed 2.49MB
mm9_five_prime_utrs.bed 1.98MB
mm9_three_prime_utrs.bed 1.96MB
hg19_v19_stop_codons.bed 1.87MB
GRCh38_stop_codons.bed 1.86MB
GRCh38_v24_stop_codons.bed 1.86MB
hg19_stop_codons.bed 1.86MB
mm9_genes.bed 1.74MB
ce10_genes.bed 1.57MB
hg19_v19_start_codons.bed 1.46MB
hg19_start_codons.bed 1.46MB
mm9_stop_codons.bed 1.45MB
GRCh38_v24_start_codons.bed 1.4MB
GRCh38_start_codons.bed 1.4MB
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