rnaquast:从RNA-Seq数据进行从头转录组组装的质量评估
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2021-05-16
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rnaquast-master.zip （94个子文件） 
rnaquast-master 
GPLv2.txt 18KB metrics 
TranscriptsMetrics.py 17KB GeneDatabaseMetrics.py 5KB ReadsCoverage.py 9KB SimpleTranscriptsMetrics.py 25KB AssemblyCorrectnessMetrics.py 2KB OneTranscriptCoverage.py 5KB IsoformsCoverage.py 22KB BasicTranscriptsMetrics.py 3KB __init__.py 20B TranscriptsCoverage.py 10KB FusionMisassembleMetrics.py 10KB AssemblyCompletenessMetrics.py 16KB InternalIsoformsCoverage.py 2KB quast_libs qconfig.py 28KB reporting.py 31KB N50.py 2KB plotter_data.py 2KB plotter.py 34KB site_packages _bz2.py 4KB joblib2 testing.py 410B hashing.py 6KB logger.py 5KB parallel.py 19KB func_inspect.py 9KB disk.py 3KB __init__.py 4KB numpy_pickle.py 15KB format_stack.py 16KB memory.py 22KB my_exceptions.py 3KB _compression.py 5KB __init__.py 0B ordered_dict.py 9KB bz2.py 12KB joblib3 testing.py 410B hashing.py 9KB pool.py 23KB _multiprocessing_helpers.py 1KB logger.py 5KB parallel.py 35KB func_inspect.py 11KB _memory_helpers.py 4KB disk.py 3KB __init__.py 5KB numpy_pickle.py 17KB format_stack.py 15KB memory.py 36KB _compat.py 216B my_exceptions.py 3KB __init__.py 0B fastaparser.py 8KB qutils.py 39KB log.py 11KB general UtilsTools.py 25KB UtilsAnnotations.py 12KB best_alignment_set.py 4KB markdown_to_github_html.py 2KB parallel_blat_run.py 7KB misfinder.py 22KB UtilsCoverage.py 12KB rqconfig.py 2KB __init__.py 20B UtilsGeneral.py 13KB log.py 14KB UtilsPipeline.py 28KB UtilsAlignment.py 44KB rnaQUAST.py 16KB objects GTFFileAnnotation.py 3KB SortedExonsAttributes.py 3KB AlignedTranscript.py 2KB Alignment.py 25KB __init__.py 20B paste_reports_together.py 4KB LICENSE 1KB report UtilsPictures.py 14KB ShortReport.py 34KB ComparisonReport.py 2KB __init__.py 26B TXTMetricsReport.py 62KB SeparatedReport.py 6KB DistributionReport.py 38KB VERSION 6B requirements.txt 91B
changelog.html 702B test_data idba.fasta 995KB Saccharomyces_cerevisiae.R64-1-1.75.gtf 8.73MB spades.311.fasta 1.31MB Trinity.fasta 762KB Saccharomyces_cerevisiae.R64-1-1.75.dna.toplevel.fa 11.79MB
fig1.png 26KB make-targz.sh 1024B README.md 25KB manual.html 29KB资源评论
