scCancer:用于自动处理癌症中单细胞RNA-seq数据的软件包
需积分: 33 134 浏览量
2021-05-04
12:58:47
上传
评论
收藏 20.71MB ZIP 举报
scCancer-master.zip （85个子文件） 
scCancer-master 
.gitignore 49B NAMESPACE 2KB vignettes .gitignore 11B scCancer.Rmd 39KB R scAnnotation.R 81KB cnvFunction.R 22KB scCombination.R 23KB scStatistics.R 34KB utils.R 26KB .Rbuildignore 41B scCancer.Rproj 356B man runGeneSets.Rd 625B runSeurat.Rd 1KB runCellClassify.Rd 1KB runCellCycle.Rd 460B checkAnnoArguments.Rd 320B prepareData.Rd 1KB getCellTypeColor.Rd 319B plotSeurat.Rd 2KB ggplot_config.Rd 289B extractFiles.Rd 992B plotCellInteraction.Rd 500B runExprProgram.Rd 898B checkCombArguments.Rd 321B predCellType.Rd 617B genStatReport.Rd 399B checkStatArguments.Rd 320B runMalignancy.Rd 2KB genAnnoReport.Rd 397B plotMalignancy.Rd 670B runStemness.Rd 680B runScStatistics.Rd 2KB generate10Xdata.Rd 868B plotGeneSet.Rd 694B Read10Xdata.Rd 1KB runSurvival.Rd 1KB runScCombination.Rd 6KB runDoublet.Rd 500B pointDRPlot.Rd 2KB runScAnnotation.Rd 7KB getDefaultColors.Rd 383B runCellInteraction.Rd 780B plotExprProgram.Rd 822B markerPlot.Rd 1016B prepareSeurat.Rd 3KB clusterBarPlot.Rd 990B getDefaultMarkers.Rd 486B getTumorCluster.Rd 782B getDefaultGeneSets.Rd 452B README.md 3KB inst txt 
diss-genes.txt 830B hg-mm-HomologyGenes.txt 212KB pcbc-stemsig.tsv 348KB gene-chr-hg19.txt 1.15MB PairsLigRec.txt 57KB gene.chr.txt 155KB gene-chr-mm10.txt 1.18MB gene-chr-hg38.txt 1.14MB cellCycle-genes.txt 556B hallmark-pathways.txt 50KB rds cnvRef_Data-HM.RDS 10.87MB cellTypeTemplates.RDS 1.3MB cnvRef_SNN-HM.RDS 571KB cnvRef_Data-boneMarrow-MS.RDS 6.46MB cnvRef_SNN-boneMarrow-MS.RDS 340KB rmd malign-comb.Rmd 1KB SoupX.Rmd 343B main-scAnno.Rmd 11KB cellTypePred.Rmd 1KB main-scStat.Rmd 11KB stemness.Rmd 593B main-scAnnoComb.Rmd 11KB exprProgram.Rmd 1KB cellInteraction.Rmd 1KB diffExpr.Rmd 707B cellCalling.Rmd 1KB filterCell.Rmd 300B umap.Rmd 305B malignancy.Rmd 2KB contamination.Rmd 249B geneSets.Rmd 1KB cellCycle.Rmd 519B doublet.Rmd 1KB filterGene.Rmd 332B DESCRIPTION 1KB资源评论
