HiC1Dmetrics：此存储库包含“ HiC1Dmetrics”的代码和基本教程
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2021-02-16
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HiC1Dmetrics-master.zip （91个子文件） 
HiC1Dmetrics-master 
MANIFEST.in 114B .DS_Store 8KB h1d calculateTwoSample.py 9KB Multi_samples_metrics.py 7KB jc 
jctool_1.11.04.jar 27.13MB calculateMetrics.py 17KB InteractionFreq.sh 2KB compareEmission.py 734B discrete.py 8KB loadfile.py 501B AsymmetricTad.py 0B MultiTypeScore.py 14KB plotMetrics.py 7KB calldTADAllchr.py 4KB IF.bedgraph 23KB calcuDiffCI.py 2KB plotTwoSample.py 8KB __init__.py 172B __main__.py 3KB test InteractionFreq.sh 2KB __pycache__ Multi_samples_metrics.cpython-36.pyc 5KB plotTwoSample.cpython-36.pyc 7KB calculateMetrics.cpython-36.pyc 13KB loadfile.cpython-36.pyc 670B cli.cpython-37.pyc 2KB calculateTwoSample.cpython-37.pyc 8KB MultiTypeScore.cpython-36.pyc 10KB callDirectionalTAD.cpython-36.pyc 6KB discrete.cpython-36.pyc 7KB plotTwoSample.cpython-37.pyc 7KB MultiTypeScore.cpython-37.pyc 11KB loadfile.cpython-37.pyc 752B __init__.cpython-37.pyc 344B callDirectionalTAD.cpython-37.pyc 6KB HiCmetric.cpython-37.pyc 3KB calculateTwoSample.cpython-36.pyc 8KB plotMetrics.cpython-36.pyc 6KB __main__.cpython-37.pyc 2KB calculateMetrics.cpython-37.pyc 13KB plotMetrics.cpython-37.pyc 6KB calldTADAllchr.cpython-36.pyc 4KB callDirectionalTAD.py 9KB gd mm10 mm10_genome_table 331B
mm10_geneDensity50000.txt 1.3MB mm10_refFlat.bed 1.79MB mm9 mm9_50000_gd.txt 1.3MB mm9_genome_table 331B hg19 genome_table 376B hg19_geneDensity50000.txt 1.5MB modiref.sh 94B refFlat_hg19.bed 3.04MB .txt 0B hg38 geneDensity25000.txt 2.99MB genome_table 376B refFlat.bed 2.86MB gd50000.txt 1.5MB makeDensity.sh 1KB HiCmetric.py 3KB metrics.bedGraph 28KB IMG 
Figure2.png 426KB Figure6.png 419KB Figure1.png 211KB Figure7.png 446KB Figure3.png 197KB Figure4.png 269KB setup.py 846B README.md 8KB test_data Control_1 
observed.KR.chr21.matrix.gz 1.66MB observed.KR.chr20.matrix.gz 4.61MB emissions_8.png 18KB emissions_9.png 15KB Rad21KD_1 observed.KR.chr21.matrix.gz 1.77MB observed.KR.chr20.matrix.gz 4.85MB emissions_9.txt 1KB emissions_8.txt 1KB Streamlit20201020 SessionState.py 3KB calculateMetrics.py 7KB loadfile.py 434B Rad21KD.chr21.txt 20.46MB plotMetrics.py 4KB plotDiff.py 5KB web_app_HiC1Dmetrics.py 12KB Control.chr21.txt 19.52MB __pycache__ plotDiff.cpython-37.pyc 5KB loadfile.cpython-37.pyc 702B callDirectionalTAD.cpython-37.pyc 5KB calculateMetrics.cpython-37.pyc 7KB plotMetrics.cpython-37.pyc 4KB callDirectionalTAD.py 7KB LISENSE 34KB
metrics.pdf 146KB
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