SINCERA:用于单个细胞RNA序列分析的SINCERA管道的R实现
需积分: 16 45 浏览量
2021-05-25
16:03:15
上传
评论
收藏 58.57MB ZIP 举报
SINCERA-master.zip （94个子文件） 
SINCERA-master 
NAMESPACE 2KB DESCRIPTION 1018B R celltype.R 67KB sincera.R 43KB signature.R 41KB drivingforce.R 19KB preprocessing.R 31KB plotting.R 24KB demo humanIPF.R 10KB
MouseTFs.txt 114KB mouselung.e16.5.R 8KB LICENSE 34KB README.md 1KB data E16.5.rda 8.71MB IPF.rda 49.92MB man celltype.enrichment.Rd 1KB drivingforce.selectTFs.Rd 1KB getCells.Rd 515B cluster.diffgenes.Rd 1KB normalization.trimmed.mean.Rd 785B plotCellTypeEnrichment.Rd 546B getPCA.Rd 456B hello.Rd 128B network.inference.Rd 793B GeneStats.Rd 1KB setCellNames.Rd 405B normalization.log.Rd 628B getGenesForClustering.Rd 364B prefilterGenes.Rd 832B getCellNum.Rd 393B plotRDS.Rd 816B setGeneNames.Rd 430B filterContaminatedCells.Rd 1KB signature.prediction.1.Rd 2KB expr.minimum.Rd 505B setCellTypeMarkers.Rd 747B specificity.criterion.selection.Rd 2KB exprs.unique.Rd 1000B cluster.permutation.analysis.Rd 613B normalization.sqrt.Rd 465B setGeneMeta.Rd 603B batch.analysis.MA.Rd 992B setCellType.Rd 616B getNodesImportance.Rd 948B cluster.assignment.Rd 4KB drivingforce.getLCC.Rd 628B getGeneMeta.Rd 379B sigpred.training.sets.Rd 2KB setCellMeta.Rd 606B filterLowQualityCells.Rd 784B drivingforce.rankTFs.Rd 734B exprs.synthetic.similarity.Rd 1KB batch.analysis.ISCCD.Rd 895B plotPCASD.Rd 411B cluster.ordering.Rd 759B exprs.common.Rd 1KB signature.prediction.Rd 2KB plotHeatmap.Rd 1019B celltype.validation.Rd 613B copyCellMeta.Rd 536B getExpression.Rd 733B getExprQuantiles.Rd 954B getCellMeta.Rd 437B getCellTypeMarkers.Rd 526B getGeneNum.Rd 350B doTSNE.Rd 1KB celltype.enrichment.initKB.Rd 1KB setExpression.Rd 659B cluster.permutation.analysis.1.Rd 1KB getCellType.Rd 911B doPCA.Rd 804B construct.Rd 948B getGenes.Rd 389B drivingforce.selectTGs.Rd 1KB drivingforce.inferTRN.Rd 922B plotHC.Rd 877B signature.validation.Rd 795B sincera.Rd 2KB batch.analysis.Rd 862B sigpred.testing.sets.Rd 1KB exprs.test.statistic.metric.Rd 1KB plotMarkers.Rd 1KB setPCA.Rd 471B normalization.zscore.1.Rd 867B setGenesForClustering.Rd 460B consensus_maximization.Rd 366B specificity.thresholdSelection.Rd 469B batch.analysis.QQ.Rd 1KB exprs.specificity.Rd 1KB copyGeneMeta.Rd 523B normalization.zscore.Rd 736B cluster.geneSelection.Rd 970B clusterings.compare.Rd 1KB .gitignore 512B资源评论
