usher-master.zip （53个子文件） 
usher-master images 
phangorn.png 158KB pre-processing.png 69KB branch-parsimony-score.png 76KB placement.png 82KB usher_logo.png 50KB
environment.yml 408B .github workflows cmake.yml 942B test global_samples.vcf 1.32MB myAlignedSequences.fa 149KB combined.fa 119KB new_samples.vcf 568B test_merged.vcf 2KB NC_045512v2.fa 30KB Fasta2UShER Fasta2UShER-Testfile_09_09_20_R941_Covid2_Guppy_4.0.11_guppy_demultiplexed_barcode03.muscle.out.fasta 60KB Fasta2UShER-Testfile_09_09_20_R941_Covid2_Guppy_4.0.11_guppy_demultiplexed_barcode01.muscle.out.fasta 30KB Fasta2UShER-Testfile_09_09_20_R941_Covid2_Guppy_4.0.11_guppy_demultiplexed_barcode02.muscle.out.fasta 30KB global_phylo.nh 10KB Dockerfile 448B LICENSE 1KB src usher.cpp 79KB Instrumentor.h 4KB mutation_annotated_tree.hpp 6KB usher_mapper.cpp 20KB mutation_annotated_tree.cpp 42KB usher_graph.hpp 2KB matUtils select.cpp 8KB filter.hpp 387B uncertainty.cpp 22KB describe.cpp 4KB summary.cpp 8KB describe.hpp 260B select.hpp 532B summary.hpp 326B convert.cpp 11KB optimize.cpp 32KB uncertainty.hpp 726B mask.cpp 6KB convert.hpp 98B mask.hpp 198B filter.cpp 3KB annotate.cpp 19KB annotate.hpp 383B main.cpp 21KB common.hpp 254B README.md 5KB optimize.hpp 143B installMacOS.sh 787B .gitignore 68B
CMakeLists.txt 3KB parsimony.proto 808B README.md 21KB installUbuntu.sh 652B installCentOS.sh 2KB资源评论
