nextflow_pipelines：Babraham中使用的NGS处理管道集
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2021-02-22
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nextflow_pipelines：Babraham中使用的NGS处理管道集 （125个子文件） 
nextflow.config 966B 129_Cast_GRCm38.genome 968B FVB_Cast_GRCm38.genome 926B NCBIM37_Cast.genome 777B CAST_EiJ_N-masked_GRCm38_129_excluded.genome 776B R64-1-1_2Micron.genome 762B FVB_Cast_NCBIM37.genome 708B 129S1_SPRET_EiJ_dual_hybrid_N-masked_GRCm38.genome 706B 129S1_SvImJ_N-masked_GRCm38.genome 699B R64-1-1.genome 698B WBcel235_ERCC.genome 697B CAST_EiJ_N-masked_GRCm38.genome 662B GRCm38_ERCC_nonchr.genome 655B GRCm38_brainbow.genome 655B SPRET_EiJ_N-masked_GRCm38_129_excluded.genome 645B PWK_PhJ_N-masked_GRCm38.genome 643B WBcel235.genome 642B DBA_2J_N-masked_GRCm38.genome 627B CBA_J_N-masked_GRCm38.genome 615B R64-1-1_2Micron_mutation_masked.genome 595B FVB_GRCm38.genome 563B R64-1-1_2Micron_mutation.genome 554B TAIR10.genome 538B GRCh38_dbSNP_N-masked.genome 520B NCBIM37_129.genome 513B GRCh38_NANOGP1.genome 505B 129S1_SvImJ_GRCm38.genome 504B Sscrofa11.1.genome 503B Sscrofa10.2.genome 500B CHOK1GS_HDv1.genome 498B CMV_Brainbow.genome 498B GRCm38_ERCC.genome 498B ARS-UCD1.2.genome 492B GRCz10.genome 490B GRCh37_ERCC.genome 488B C3H_HeH.genome 486B SPRET_EiJ_N-masked_GRCm38.genome 485B BALB_cJ_N-masked_GRCm38.genome 483B BALB_cJ_GRCm38.genome 476B GRCh37_N-masked.genome 473B NCBIM37.genome 466B EF4.genome 463B CBA_J_GRCm38.genome 462B UMD3.1.genome 452B Zv9.genome 445B GRCh38.genome 443B GRCm38.genome 443B GRCh37.genome 443B BDGP5.genome 430B GRCh38_ERCC.genome 429B Rnor_6.0.genome 424B GRCh38_rRNA.genome 418B AGPv4.genome 384B BDGP6.genome 349B PhiX.genome 333B Meug_1.0.genome 331B Callithrix_jacchus_3.2.1.genome 311B BROAD05.genome 309B MMUL_1.genome 307B Polistes.genome 275B MMUL_8.genome 274B rRNA.genome 257B MGP.N-masked.genome 240B Mouse_ribosomal.genome 233B Apis.genome 224B Lambda.genome 221B E_coli.genome 214B mirbase20_mus.genome 202B mirbase20_hum.genome 202B ERCC.genome 201B mirbase20_rat.genome 199B zflora.genome 182B Nasonia.genome 155B GRCm38_inf.genome 142B None.genome 23B .gitignore 48B LICENSE 34KB Nextflow_at_Babraham.md 29KB README.md 4KB files.mod.nf 3KB bismark_methylation_extractor.mod.nf 2KB trim_galore.mod.nf 2KB coverage2cytosine.mod.nf 2KB genomes.mod.nf 2KB bismark.mod.nf 2KB hisat2.mod.nf 1KB samtools.mod.nf 1KB bowtie2.mod.nf 1KB umibam.mod.nf 1KB fastq_screen.mod.nf 1KB bismark_deduplication.mod.nf 871B bismark2summary.mod.nf 757B multiqc.mod.nf 601B fastqc.mod.nf 513B bismark2report.mod.nf 402B nf_bismark 6KB nf_bisulfite_PBAT 15KB nf_bisulfite_RRBS 13KB nf_bisulfite_RRBS_clock 15KB nf_bisulfite_scBSseq 14KB共 125 条
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