DEST_freeze1
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2021-04-19
21:13:50
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DEST_freeze1 （103个子文件） 
ghcnd-stations.csv 2.99MB samps_worldclim.csv 102KB drosEU_SraRunInfo.csv 81KB dpgp.ind.use.csv 59KB dest.worldclim.csv 56KB samps.csv 50KB rd.csv 23KB simulans.csv 20KB pcr.csv 6KB Dockerfile 7KB dmel-all-transposon-r6.12.fasta 8.39MB dmel-all-transposon-r6.12_fixed-id.fasta 7.27MB dmel-all-chromosome-r6.12.fasta.out.gff 12.03MB .gitignore 10B
dmel-all-chromosome-r6.12.fasta.gz 40.72MB D_simulans.fasta.gz 37.06MB dmel-all-chromosome-r6.12.fasta.masked.gz 35.07MB dmel-all-transposon-r6.12.fasta.gz 2.27MB dgn.list 483B README.md 9KB README.md 6KB README.md 3KB README.md 1KB README.md 944B README.md 649B PoolSnp_README.md 624B oldold 8KB PickleRef.py 11KB PoolSnp.py 10KB Mpileup2Sync.py 8KB MaskSYNC_snape_monomorphic_filter.py 7KB MaskSYNC_snape_monomorphic_filter.2.py 7KB SNAPE2SYNC.py 6KB MaskSYNC_snape.py 5KB MaskSYNC_snape_complete.py 5KB guess_encoding.py 5KB MaskSYNC.py 4KB Snape_to_VCF.py 3KB fix_bam.py 3KB makeNiceMap.py 2KB get_sample_name.py 370B adjust-id.py 225B makeJointSampleInfo.R 14KB sequencingSummaryStats.R 7KB makePlots.R 3KB get_data_dest.R 3KB paste.R 2KB makeJobs.R 1KB merge_troubleshoot.R 1KB makeNiceMap.R 1KB w2l_check.R 824B getSNP_list_drosRTEC.R 820B vcf2gds.R 380B check4dups.R 276B fq_to_sync_pipeline.sh 12KB get_dpgp_workstation.sh 9KB unpack.sh 7KB hologene_gen.sh 6KB run_poolsnp.sh 5KB Hologenome_dmel6.12.sh 5KB run_poolsnp_paramtest.sh 4KB liftover_r5_to_r6.sh 3KB annotate.sh 3KB makePopGenomeSync.sh 3KB runDocker.sh 2KB sync_knownSites.sh 2KB makePopSync.sh 2KB final_SNP_list.sh 2KB annotate_paramtest.sh 2KB mergeSNPlist.sh 2KB concatenate.sh 2KB gather_poolsnp_paramtest.sh 2KB gather_poolsnp.sh 1KB filterFinal.sh 1KB download_SRA.sh 1KB move.sh 1KB makeNiceMap.sh 1KB pop_chr_maker.sh 990B getRefGenome.sh 979B check_fastq_encoding.sh 973B findAllSites.sh 914B rbindSync.sh 843B getSNP_list_drosRTEC.sh 816B wide2long.sh 782B downloadDGN.sh 764B liftover_r6_to_r5.sh 686B getSimContaminationLevel.sh 673B getSNP_list_drosEU.sh 659B Mpileup2Snape.sh 640B
drosRTEC_set2_SraRunInfo.txt 31KB snapeURLs0.txt 29KB snapeURLs.txt 29KB syncURLs.txt 25KB syncURLs0.txt 25KB output.txt 23KB drosRTEC_set1_SraRunInfo.txt 8KB input.txt 7KB
TableS1_individuals.xls 416KB TableS2_populations.xls 34KB
DrosEU_allYears_210120.xlsx 200KB共 103 条
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