bwa-spark-fpga-master.zip （61个子文件） 
bwa-spark-fpga-master src 
pom.xml 3KB README.md 50B main scala cs ucla edu bwaspark jni SWExtendFPGAJNI.scala 140B fastq FASTQRDDLoader.scala 2KB FASTQLocalFileLoader.scala 5KB SerializableFASTQRecord.java 2KB profiling SWBatchTimeBreakdown.scala 2KB datatype BWTIntvType.scala 772B ExtensionParameters.scala 2KB MemAlnRegArrayType.scala 156B MemPeStat.scala 216B BWTType.scala 4KB SRTType.scala 250B MemChainType.scala 601B BinaryFileReadUtil.scala 3KB MemAlnType.scala 642B SWPreResultType.scala 264B ReadType.scala 1KB CigarSegType.scala 190B MemAlnRegType.scala 2KB BWAIdxType.scala 2KB MemOptType.scala 3KB BNTSeqType.scala 4KB BNTAnnType.scala 964B SMemItrType.scala 962B BNTAmbType.scala 604B CigarType.scala 216B debug DebugFlag.scala 354B TestBWAIdxType.scala 3KB TestBWAIdxType.scala.bak 3KB util SWUtil.scala 10KB BNTSeqUtil.scala 3KB BWAMEMSpark.scala 10KB worker1 BWAMemWorker1Batched.scala 7KB MemChainFilter.scala 8KB MemSortAndDedup.scala 4KB BWAMemWorker1.scala 3KB SAPos2RefPos.scala 3KB MemChain.scala 15KB MemChainToAlign.scala 17KB MemChainToAlignBatched.scala 46KB BWTSMem.scala 12KB worker2 BWAMemWorker2.scala 1KB MemRegToADAMSAM.scala 17KB MemMarkPrimarySe.scala 3KB java accUCLA accAPI ACC_requester.java 394B big2LittleEndian.java 2KB .BackwardKernel.java.swp 16KB MyTimer.java 327B Connector2FPGA.java 6KB cs ucla edu avro fastq FASTQRecord.java 11KB FASTQ.java 827B jni_fpga sw_extend_fpga.c 4KB avro fastq.avdl 176B run_script_profile.sh 2KB alphadata shm_host.c 14KB my_socket.h 2KB alphadata_host.tcl 3KB my_timer.h 1KB pom.xml 9KB README.md 17B资源评论
