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GenSeed-HMM:使用DNA,蛋白质或轮廓HMM作为种子的渐进式组装工具。-开源
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2021-04-30
17:27:24
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共2000个文件
fasta:4839个
txt:3636个
qual:64个
GenSeed-HMM是一个程序,用于种子驱动的渐进式DNA组装。 它在许多方面与以前发布的GenSeed不同,但更明显的是它能够使用HMM概要文件作为种子。 基本上,GenSeed-HMM重复执行三个操作:-通过将它们与种子匹配来募集读物-组装募集的读物(包括先前组装的重叠群)-从所有产生的末端生成新的种子(用于下一轮渐进式组装) contigs第一个种子由用户提供,可以是一段DNA或蛋白质序列,也可以是HMM轮廓,以提高灵敏度。 该程序取决于BLAST +或hmmsearch和许多第三方支持工具(EMBOSS的Transeq和splitter,领结,454的sfffile和sffinfo)。 哪些工具是强制性的,取决于所使用的种子和汇编程序的类型。 当前支持的汇编程序包括CAP3,Newbler,SOAPdenovo,Velvet和Abyss。
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GenSeed-HMM:使用DNA,蛋白质或轮廓HMM作为种子的渐进式组装工具。-开源 (2000个子文件)
assembler_log_round2.txt 3.28MB
reads_list.txt 1.75MB
assembler_log_round5.txt 1.56MB
assembler_log_round3.txt 1.51MB
reads_list.txt 1.47MB
assembler_log_round4.txt 1.4MB
assembler_log_round6.txt 1.29MB
assembler_log_round1.txt 1.26MB
assembler_log_round7.txt 1.21MB
assembler_log_round8.txt 1.07MB
assembler_log_round10.txt 956KB
assembler_log_round11.txt 912KB
assembler_log_round9.txt 906KB
reads_list.txt 882KB
assembler_log_round12.txt 842KB
assembler_log_round13.txt 707KB
reads_list.txt 554KB
reads_list.txt 511KB
assembler_log_round14.txt 450KB
result_similarity_search_round1.txt 445KB
result_similarity_search_round1.txt 445KB
assembler_log_round15.txt 378KB
assembler_log_round16.txt 296KB
assembler_log_round17.txt 273KB
result_similarity_search_round2.txt 210KB
assembler_log_round18.txt 150KB
assembler_log_round19.txt 126KB
result_similarity_search_round2.txt 116KB
result_similarity_search_round3.txt 100KB
result_similarity_search_round4.txt 85KB
result_similarity_search_round3.txt 79KB
assembler_log_round20.txt 76KB
result_similarity_search_round5.txt 70KB
result_similarity_search_round7.txt 70KB
result_similarity_search_round5.txt 67KB
result_similarity_search_round4.txt 64KB
result_similarity_search_round6.txt 63KB
result_similarity_search_round6.txt 62KB
result_similarity_search_round7.txt 59KB
result_similarity_search_round8.txt 55KB
result_similarity_search_round8.txt 53KB
result_similarity_search_round9.txt 51KB
result_similarity_search_round10.txt 46KB
result_similarity_search_round9.txt 44KB
assembler_log_round28.txt 43KB
assembler_log_round27.txt 43KB
assembler_log_round26.txt 43KB
assembler_log_round24.txt 43KB
assembler_log_round25.txt 42KB
assembler_log_round29.txt 41KB
assembler_log_round23.txt 41KB
result_similarity_search_round1.txt 41KB
result_similarity_search_round1.txt 41KB
result_similarity_search_round1.txt 41KB
result_similarity_search_round11.txt 37KB
result_similarity_search_round11.txt 35KB
assembler_log_round22.txt 34KB
result_similarity_search_round12.txt 34KB
result_similarity_search_round12.txt 34KB
assembler_log_round21.txt 33KB
result_similarity_search_round10.txt 33KB
result_similarity_search_round13.txt 32KB
result_similarity_search_round14.txt 31KB
result_similarity_search_round13.txt 29KB
result_similarity_search_round247.txt 25KB
result_similarity_search_round15.txt 25KB
result_similarity_search_round121.txt 25KB
result_similarity_search_round193.txt 25KB
result_similarity_search_round149.txt 24KB
result_similarity_search_round249.txt 24KB
result_similarity_search_round176.txt 24KB
result_similarity_search_round244.txt 24KB
result_similarity_search_round179.txt 24KB
result_similarity_search_round119.txt 23KB
result_similarity_search_round204.txt 23KB
result_similarity_search_round188.txt 23KB
result_similarity_search_round155.txt 23KB
result_similarity_search_round246.txt 23KB
result_similarity_search_round252.txt 23KB
result_similarity_search_round217.txt 23KB
result_similarity_search_round174.txt 23KB
result_similarity_search_round127.txt 23KB
result_similarity_search_round261.txt 23KB
result_similarity_search_round14.txt 23KB
result_similarity_search_round229.txt 23KB
result_similarity_search_round164.txt 23KB
result_similarity_search_round166.txt 23KB
result_similarity_search_round169.txt 23KB
result_similarity_search_round224.txt 23KB
result_similarity_search_round236.txt 22KB
result_similarity_search_round220.txt 22KB
result_similarity_search_round248.txt 22KB
result_similarity_search_round168.txt 22KB
result_similarity_search_round178.txt 22KB
result_similarity_search_round202.txt 22KB
result_similarity_search_round194.txt 22KB
result_similarity_search_round135.txt 22KB
result_similarity_search_round177.txt 22KB
result_similarity_search_round154.txt 22KB
result_similarity_search_round225.txt 22KB
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