neofox:用已发表或新颖的潜在新表位描述符注释突变的肽序列（mps）
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2021-03-28
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neofox:用已发表或新颖的潜在新表位描述符注释突变的肽序列（mps） （247个子文件） 
make.bat 764B setup.cfg 40B style.css 41B PROV_scores_mapped3.first200linesfortesting.csv 28KB patient.Pt29.csv 322B alleles.Pt29.csv 263B patient.Pt29.without_mhc1.csv 251B patient.Pt29.without_mhc2.csv 173B Dockerfile 3KB neofox_model.drawio 4KB neofox_data_serialization.drawio 2KB proteome_test.fa 110KB uniprot.first200linesfortesting.fasta 12KB uniprot_human_with_isoforms.first200linesfortesting.fasta 12KB temp.fasta 10B .gitattributes 324B .gitignore 163B
tcga_exp_summary_modified.tab.gz 15.3MB PROV_scores_mapped3.first200linesfortesting.tab.gz 7KB
repo-buttom.html 728B layout.html 156B tron-buttom.html 84B MANIFEST.in 661B reproducibility_balachandran.ipynb 2.14MB plot.ipynb 269KB performance_tests_plot.ipynb 100KB api_usage.ipynb 78KB api_usage-checkpoint.ipynb 49KB tron_small.jpeg 6KB
performance_time_1.jpg 241KB performance_time_2.jpg 224KB performance_1.jpg 213KB performance_1.jpg 213KB performance_time_3.jpg 190KB performance_memory_1.jpg 176KB performance_time_4.jpg 173KB supplementary_table1_neoantigens.json 860KB supplementary_table1_patients.json 49KB test_data_json.json 920B LICENSE 34KB Makefile 638B Makefile 248B SIRdata.mat 50KB 03_02_output_data.md 47KB README.md 13KB 03_03_usage.md 13KB 05_models.md 11KB 03_01_input_data.md 8KB 01_overview.md 7KB 02_installation.md 5KB 04_developer_guide.md 2KB README.md 806B README.md 699B 03_04_examples.md 220B
1205.6031.pdf 307KB iedb_blast_db.phr 296KB Classifier.pickle 11.75MB genes-expression.pickle 459KB amino-acids-features.pickle 768B iedb_blast_db.pin 18KB
neofox_model.png 94KB figure1_v3.png 74KB neofox_data_serialization.png 47KB neofox_performance_test_servers_balachandran.png 41KB neofox_performance_test_balachandran.png 31KB
Biological_data_modelling.pptx 332KB neoantigen.proto 6KB iedb_blast_db.psq 27KB conversion.py 37KB test_models.py 24KB test_validation.py 22KB test_neofox.py 18KB annotator.py 17KB combine_netmhcpan_pred_multiple_binders.py 16KB combine_netmhcIIpan_pred_multiple_binders.py 13KB test_best_multiple_binder.py 11KB neofox.py 11KB command_line.py 10KB installer.py 10KB test_neofox.py 9KB test_mixmhcpred.py 8KB references.py 8KB factories.py 7KB neoantigen.py 7KB mixmhc2pred.py 7KB differential_binding.py 6KB self_similarity.py 6KB mixmhcpred.py 6KB tcellpredictor_wrapper.py 6KB iedb.py 5KB neoantigen_fitness.py 5KB preprocess.py 5KB epitope_helper.py 5KB test_netmhcpan.py 5KB netmhcIIpan_prediction.py 4KB priority_score.py 4KB data_generator.py 4KB amplitude.py 4KB vaxrank.py 4KB aligner.py 4KB共 247 条
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