depmap_omics:处理Terra的季度DepMap-Omics版本所需的内容 （803个子文件） 
Condel 77B prevsegments.csv 20.58MB legacy_segments.csv 19.8MB fullccle.csv 1.91MB ccle_samples.csv 1.84MB ccle_samples - ccle_samples.csv 1.83MB ccle_samples.csv 1.81MB genemapping_19Q1.csv 946KB output_StJude.csv 675KB StJude.WGS.CNV.seg.csv 675KB state.csv 350KB ccle_versions_state.csv 333KB naming.csv 162KB bridgingFile.csv 45KB rnamissing_save.csv 6KB mutmissing_save.csv 5KB additionalCN.csv 5KB cnmissing_save.csv 5KB cnmissing_save.csv 5KB Mutconfig.csv 3KB Mutconfig.csv 3KB Mutconfig.csv 2KB RNAconfig.csv 2KB RNAconfig.csv 2KB RNAconfig.csv.csv 2KB RNAconfig.csv 2KB _qc_results.csv 2KB WGSconfig.csv 2KB Mutconfig.csv 2KB additionalCNWES.csv 2KB RNAconfig.csv 2KB RNAconfig.csv 2KB worflow_list.csv 2KB WGSMutconfig.csv 2KB worflow_list.csv 2KB CNVconfig.csv 2KB _qc_results.csv 2KB worflow_list.csv 1KB CNVconfig.csv 1KB _qc_results.csv 1KB CNVconfig.csv 1KB CNVconfig.csv 1KB _qc_results.csv 329B _qc_results.csv 329B .gitattributes 45B .gitignore 3KB msigdb.v7.2.symbols.gmt 25.11MB ALL.gmt 6.32MB TRANSFAC_and_JASPAR_PWMs.gmt 2.67MB GO_Biological_Process_2015.gmt 1.99MB GO_Molecular_Function_2015.gmt 449KB GO_Cellular_Component_2015.gmt 341KB cancer_modules.gmt 315KB positional.gmt 306KB Chromosome_Location.gmt 248KB chr_arms.gmt 207KB oncogenic.gmt 198KB KEGG_2016.gmt 168KB CORUM.gmt 111KB hallmark.gmt 47KB Reactome_2013.gmt 36KB BioCarta_2013.gmt 29KB GDSC_target.gmt 4KB
hg38_cytoband.gz 10KB
ccle_fingerprint_analysis.html 10.41MB WGS_CCLE.html 1.08MB RNA_CCLE.html 979KB firecloud_documentation.html 655KB DepMap Upload.html 580KB preprocessing_Achilles.html 490KB 20Q4postmortem.html 37KB wes_agilent_hg19_baits.interval_list 2KB CCLF_check_true_CL.ipynb 5.86MB RNA_CCLF_August.ipynb 1.24MB RNA-chordoma.ipynb 1.01MB ccle_versions.ipynb 217KB WGS_CCLE.ipynb 99KB RNA-James.ipynb 86KB RNA_CCLF.ipynb 66KB Mutations_prev_new_comparison.ipynb 60KB post_21Q1_tracker_cleaning.ipynb 52KB Mutations_CCLE.ipynb 51KB Copy_Number_CCLE.ipynb 50KB RNA_CCLE.ipynb 49KB ccle_versions-part2.ipynb 39KB DepMap Upload.ipynb 32KB import_st_jude_rms.ipynb 26KB Copy_Number_CCLF.ipynb 20KB comparing mutations MV411.ipynb 19KB CCLF_report_per_cell_line.ipynb 19KB Mutations_CCLF.ipynb 18KB compare filtered-unfiltered.ipynb 17KB preprocessing_Achilles.ipynb 15KB CNV_PoN_XY_WES.ipynb 10KB CNV_PoN_XY_WGS.ipynb 9KB upload_entities_from_tsvs.ipynb 8KB compare new-old from GCP RNA.ipynb 7KB NB_Mut_ABSOLUTE.ipynb 5KB compare new-old file.ipynb 5KB compare new-old from GCP WES.ipynb 5KB共 803 条
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