regioneR：RBioconfuctor软件包，用于基于置换测试进行基因组区域的关联分析
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regioneR：RBioconfuctor软件包，用于基于置换测试进行基因组区域的关联分析 （130个子文件） 
4columns.bed 54B bed_with_header.bed 44B regs.bed 30B CITATION 836B DESCRIPTION 998B .gitignore 12B NAMESPACE 2KB NEWS 2KB
Example2_fig4.pdf 27KB Example2_fig1.pdf 9KB Example2_fig3.pdf 8KB Example1_fig1.pdf 7KB special_genes_5000perm.pdf 6KB Example2_fig2.pdf 6KB regular_genes_5000perm.pdf 6KB speed_test_regioneR_small.pdf 5KB mask_test_regioneR_small.pdf 5KB
Example2_fig4.png 98KB special_genes_5000perm.png 57KB regular_genes_5000perm.png 57KB speed_test_regioneR_small.png 42KB Example2_fig1.png 42KB Example2_fig3.png 33KB Example1_fig1.png 28KB Example2_fig2.png 27KB mask_test_regioneR_small.png 15KB randomizeRegions.R 16KB toGRanges.R 16KB permTest.R 12KB overlapRegions.R 11KB plot.permTestResults.R 6KB test_toGRanges.R 6KB overlapPermTest.R 4KB circularRandomizeRegions.R 4KB plotRegions.R 4KB splitRegions.R 4KB overlapGraphicalSummary.R 4KB createRandomRegions.R 4KB localZScore.R 3KB createFunctionsList.R 3KB getGenome.R 3KB maskFromBSGenome.R 3KB filterChromosomes.R 3KB meanInRegions.R 3KB getChromosomesByOrganism.R 2KB getGenomeAndMask.R 2KB plot.permTestResultsList.R 2KB plot.localZScoreResults.R 2KB extendRegions.R 2KB test_randomizationFunctions.R 2KB joinRegions.R 2KB resampleRegions.R 2KB mergeRegions.R 2KB plot.localZScoreResultsList.R 2KB test_evaluationFunctions.R 2KB getMask.R 2KB numOverlaps.R 2KB uniqueRegions.R 2KB commonRegions.R 1KB toDataframe.R 1KB characterToBSGenome.R 1KB subtractRegions.R 1KB utils.R 1KB meanDistance.R 1KB recomputePermTest.R 1KB summary.permTestResults.R 1KB print.permTestResults.R 1KB summary.permTestResultsList.R 953B listChrTypes.R 824B test_permTest.R 646B emptyCacheRegioneR.R 518B testthat.R 60B test_genomesAndMasks.R 54B test_numOverlaps.R 0B toGRanges.Rd 7KB permTest.Rd 4KB overlapRegions.Rd 3KB overlapPermTest.Rd 3KB randomizeRegions.Rd 3KB createRandomRegions.Rd 3KB circularRandomizeRegions.Rd 2KB plot.permTestResultsList.Rd 2KB getGenome.Rd 2KB plot.permTestResults.Rd 2KB createFunctionsList.Rd 2KB filterChromosomes.Rd 2KB joinRegions.Rd 2KB mergeRegions.Rd 2KB getGenomeAndMask.Rd 2KB extendRegions.Rd 2KB plot.localZScoreResultsList.Rd 1KB meanInRegions.Rd 1KB localZScore.Rd 1KB splitRegions.Rd 1KB commonRegions.Rd 1KB numOverlaps.Rd 1KB overlapGraphicalSummary.Rd 1KB uniqueRegions.Rd 1KB plot.localZScoreResults.Rd 1KB getMask.Rd 1KB共 130 条
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