Recombination-Rates:确定细菌物种重组率的程序
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2021-04-30
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Recombination-Rates:确定细菌物种重组率的程序 （147个子文件） 
simulated_alignment.fasta 21KB CMsVsSNPS.m 717B convergentMutationToSNPRatioCalc2.m 608B convergentMutationToSNPRatioCalc.m 593B multiple_linear_regression.m 524B lambdaplots.m 333B README.md 3KB model_application.py 25KB simulations.py 22KB simulations.py 22KB simulations.py 22KB get_matrices.py 21KB simulations_uvwxyz.py 18KB simulations_uvwxyz.py 18KB old_simulations.py 17KB model.py 17KB model.py 15KB run_sims.py 15KB run_sims.py 15KB completely_new_thing.py 14KB model.py 11KB data_averages.py 11KB data_averages.py 11KB run_pyvolve.py 10KB apply_model_along_phylogeny.py 9KB get_c_from_pyvolve.py 9KB get_c_from_pyvolve.py 9KB process_genomes.py 9KB convert_ID_to_c.py 8KB process_genomes.py 8KB mutation_sim.py 7KB data_formatting.py 7KB data_formatting.py 7KB efficient_functions2.py 6KB efficient_functions.py 6KB id_sim.py 6KB functions.py 5KB SNPs_sim.py 4KB model_evaluations.py 4KB model_evaluations.py 4KB get_values_from_bobay.py 4KB get_values_from_bobay.py 4KB data_for_bobay.py 3KB rowells_method.py 3KB get_genomic_ids.py 3KB get_genomic_ids.py 3KB completely_new_thing.py 3KB run_model_matrices.py 2KB get_genomic_parameters.py 2KB get_genomic_parameters.py 2KB calculate_expected_c_sim.py 2KB get_newick_format.py 2KB get_newick_format.py 2KB get_random_tree.py 2KB run_identity_sim.py 2KB run_pyvolve.py 2KB run_generation_sim.py 2KB test_pyvolve.py 2KB test_pyvolve.py 2KB prob_check_sim.py 2KB run_mutation_sites_sim.py 2KB run_mutation_sites_sim.py 2KB get_cm_vs_m_coefficients.py 1KB get_cm_vs_m_coefficients.py 1KB get_mg_vs_mustar.py 1KB get_mg_vs_mustar.py 1KB get_random_tree.py 1KB run_mutation_sim.py 1KB run_mutation_sim.py 1KB tree_sim.py 1KB tree_sim.py 1KB run_mutation_sim.py 1KB remove_unknowns.py 1KB model_c_vs_id.py 1KB model_c_vs_id.py 1KB cm_vs_id_model_data.py 1KB cm_vs_id_model_data.py 1KB model_c_vs_m.py 778B model_c_vs_m.py 778B test_probs.py 716B concatenate_csvs.py 462B concatenate_csvs.py 462B get_internal_nodes.py 459B test_change.py 296B calculate_expected_c_model.py 263B calculate_expected_c_model.py 263B run_id_matrix_sim.py 254B double.py 253B double.py 253B concatenate_identity_sim_data.py 248B run_c_q_sim.py 243B concatenate_model_c_vs_m.py 232B concatenate_model_c_vs_m.py 232B concatenate_generation_sim_data.py 216B concatenate_model_c_vs_id.py 203B concatenate_model_c_vs_id.py 203B test_pi.py 199B combine_mutation_sim_data.py 168B combine_mutation_sim_data.py 168B concatenate_mutation_sim_data.py 158B共 147 条
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