milo:KNN图上的微分丰度
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2021-05-03
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milo-master.zip （78个子文件） 
milo-master 
run_scalability_liver.R 3KB notebooks .ipynb_checkpoints milo_in_python-checkpoint.ipynb 1.27MB
20201007_randomVSrefined_sampling.nb-checkpoint.html 971KB 20200802_HumanThymusDA.nb.html 8.76MB 20201012_GastrulationAtlas.nb.html 2.86MB 20200828_HumanThymus_preprocessBBKNN.ipynb 4.77MB 2020-09-04_mouse_thymus.nb.html 2.04MB 20201007_randomVSrefined_sampling.Rmd 34KB 2020-09-04_mouse_thymus.Rmd 20KB 20201007_randomVSrefined_sampling.nb.html 971KB 20201013_batchEffect_simulation.nb.html 1.86MB 2020-07-29_milo_graph_simulations.Rmd 88KB 20200729_miloViz.Rmd 15KB 2020-07-29_milo_graph_simulations.nb.html 5.5MB 20201012_GastrulationAtlas.Rmd 14KB benchmark submit_make_bm_data.sh 2KB .ipynb_checkpoints run_DA_nonlinear-checkpoint.R 2KB submit_make_bm_data-checkpoint.sh 600B run_batch_benchmark-checkpoint.R 2KB run_DA_R-checkpoint.r 2KB run_meld-checkpoint.py 3KB submit_benchmark-checkpoint.sh 3KB benchmark_utils-checkpoint.R 21KB run_miloVSmeld.R 3KB write_outcome.R 3KB benchmark_utils.R 26KB 20210120_TChimera.nb.html 1.25MB make_bm_data.R 3KB run_DA_size_capped.r 3KB 1800 4KB run_batch_benchmark.R 3KB 20210115_synthetic_labels.Rmd 92KB 20210115_synthetic_labels.nb.html 8.37MB submit_benchmark_capped.sh 1KB submit_meldVSmilo.sh 792B submit_benchmark.sh 3KB submit_k_selection.sh 1KB build_outcome.R 3KB submit_benchmark_MNN.sh 1KB run_DA_R.r 3KB run_DA_nonlinear.R 2KB 20210120_TChimera.Rmd 6KB fast_run_DA_R.r 2KB run_meld.py 3KB run_batch_benchmark_pop.R 2KB 20200819_cirrhoticLivers.Rmd 49KB 20200819_cirrhoticLivers.nb.html 5.42MB 2020-09-14_methods_comparison.nb.html 4.18MB 2020-09-24_Milo_scalability.Rmd 33KB 2020-09-14_methods_comparison.Rmd 34KB 2020-09-24_Milo_scalability.nb.html 730KB 2021-01-14_Milo_stress_testing.Rmd 108KB
sinfo-requirements.txt 116B 20201013_batchEffect_simulation.Rmd 21KB 2020-08-13_k_nhSize_and_FDR.Rmd 105KB milo_in_python.ipynb 1.46MB 20200802_HumanThymusDA.Rmd 23KB 20200729_miloViz.nb.html 2.23MB .gitmodules 96B milo_temp.R 6KB milo.Rproj 205B submodules.gist 599B miloR ms figures .ipynb_checkpoints 
suppl_fig2-checkpoint.pdf 19MB suppl_fig1-checkpoint.pdf 993KB milo_figures.tex 9KB milo_figures.Rmd 6KB milo_figures.log 21KB milo_figures.pdf 21.87MB supplement milo_supplement.log 25KB milo_supplement.Rmd 18KB milo_supplement.pdf 33.67MB milo_supplement.bib 15KB suppl_tables suppl_tab1.csv 363B cell-numeric.csl 5KB milo_supplement.tex 24KB LICENSE 34KB README.md 44B .gitignore 114B资源评论
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