基因组汇编：Zizania palustris基因组的注释
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2021-02-17
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基因组汇编：Zizania palustris基因组的注释 （168个子文件） 
repeat_specific_circos.conf 10KB downsampled_circos.conf 10KB ObSH3.fa 10KB OsQSH1_b.fa 5KB OrQSH1.fa 4KB OsSH5.fa 3KB OsSH4.fa 3KB OnSH4.fa 3KB OrSH4.fa 3KB OsQSH1.fa 2KB OgGL4.fa 2KB OsLG1.fa 1KB OsSHA1.fa 1KB OsSH8.fa 1KB OsSH1.fa 1KB OgSH3.fa 895B OsWRKY.fa 641B add_scalebar_to_annotation_photo.ipynb 314KB blocks.layout 194B busco_3779550536.log 3KB README.md 17KB README.md 2KB README.md 816B
Figure_2D.png 2.92MB Figure_2E.png 1.95MB Figure_2B_venn_diagram.png 611KB venn_diagram_with_rice_relatives.png 605KB Figure_2F.png 547KB Supporting_Figure_S1_RNAseq_tissues_with_scalebar_and_letters.png 512KB Figure_2C.png 406KB karyoplotR_WR_LTRs.png 366KB karyoplotR_WR_LINEs.png 347KB karyoplotR_WR_DNA.png 340KB cumulative_plot.png 163KB Figure_1_circos_plot.png 162KB Supporting_Figure_S6_gene_ontology_plots.png 153KB Nx_plot.png 139KB Figure_4_circos_snp_downsampling.png 119KB karyoplotR_WR_genes_only.png 93KB Supporting_Figure_S5_repetitive_element_barplots.png 71KB copy_of_tau_density_plot.png 60KB copy_of_tissue_specificity_heatmap.png 53KB reduced_size_copy_of_gene_specificity_barplot.png 52KB Supporting_Figure_S7_gene_specificity_plots.png 49KB Figure_2A_with_divergence_times.png 43KB NWR_vs_Zlatifolia_genes_per_block.png 24KB NWR_vs_Osativa_genes_per_block.png 24KB pacbio_length_distr.png 21KB pacbio_length_distr.png 21KB synonymous_substitution_value_distribution.png 19KB synteny.py 17KB dotplot.py 14KB karyotype.py 12KB Backtranslate_Orthogroup_TK.py 6KB Backtranslate_Orthogroup_TK.py 6KB merge_duplications_with_bed_file.py 4KB find_blocks.py 2KB make_duplication_bed_files.py 2KB filter_phylip_seqfiles.py 1KB find_block_lengths.py 1KB find_blocks_for_KaKs.py 933B create_yn00_control_files.py 898B filter_anchor_file.py 886B find_zizania_specific_duplications.py 871B change_scaffold_names.py 785B plot_synonymous_substitution_values.py 763B filter_bed.py 705B test_gap_counter.py 700B filter_fasta_zizania_duplicates.py 678B parse_paml_output.py 635B get_unique_NWR_genes.py 556B filter_fasta.py 539B edit_names_in_phylip_file.py 529B filter_fasta_zizania_duplications.py 457B find_num_of_syntenic_blocks.py 437B filter_fasta_by_ID.py 432B get_pacbio_read_lengths.py 432B find_mean_block_length.py 389B convert_fasta_to_phylip.py 288B convert_fasta_to_phylip.py 277B modified_venn_diagram.R 13KB WR_repeats_karyoplot.R 12KB Tissue_Specificity.R 7KB rna_coverage_for_circos.R 3KB venn_diagram_orthogroups.R 2KB venn_diagram_orthogroups_with_rice_relatives.R 2KB modified_pie_function.R 2KB plot_go_terms_bar_plot.R 2KB plot_go_terms_cellular_component_pie_chart.R 1KB plot_go_terms_molecular_function_pie_chart.R 1KB plot_go_terms_biological_process_pie_chart.R 1KB WR_repeats_barplots.R 1KB run_jcvi.sh 3KB run_R_gene_analog_analysis.sh 2KB replace_scaffold_names_for_circos.sh 2KB run_jcvi_with_latifolia.sh 2KB get_pacbio_seqids.sh 1KB scythe_mpileup_downsampled_4fold.sh 1KB scythe_mpileup_downsampled_8fold.sh 1KB run_jcvi_get_orthologs.sh 1KB共 168 条
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