matlab代码影响-SINGE:从伪颞单细胞基因表达数据重建基因调控网络
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2021-05-22
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SINGE-master.zip （94个子文件） 
SINGE-master 
readme_SINGE_GLG_Test.txt 3KB
.gitignore 306B readme_SINGE_GLG_Test_mac.txt 4KB README.md 12KB data1 README.md 775B X_SCODE_data.mat 254KB X_BranchTest.mat 262KB gene_list.mat 798B USAGE.md 5KB code dropZeroSamples.m 416B SINGE_Aggregate.m 2KB iLasso_for_SINGE.m 4KB SINGE.m 933B normalizePseudotime.m 167B Modified_Borda_Aggregation.m 8KB SINGE_GLG_Test.m 3KB dropSamples.m 780B adjmatrix2edgelist.m 695B run_iLasso_row.m 720B parseParams.m 4KB NEWS.md 4KB .github workflows install-test.yml 4KB readme_SINGE_Aggregate_mac.txt 4KB tests example_hyperparameters.txt 640B README.md 2KB standalone_branching_test.sh 1007B reference latest AdjMatrix_data1_X_SCODE_datapmat_ID_542_lambda_0p01_replicate_1.mat 37KB AdjMatrix_data1_X_SCODE_datapmat_ID_541_lambda_0p01_replicate_2.mat 44KB AdjMatrix_data1_X_SCODE_datapmat_ID_542_lambda_0p01_replicate_2.mat 38KB SINGE_Ranked_Edge_List.txt 37KB SINGE_Gene_Influence.txt 1KB AdjMatrix_data1_X_SCODE_datapmat_ID_541_lambda_0p01_replicate_1.mat 45KB branching AdjMatrix_data1_X_BranchTestpmat_ID_541p3_lambda_0p01_replicate_2.mat 45KB AdjMatrix_data1_X_BranchTestpmat_ID_542p2_lambda_0p01_replicate_2.mat 39KB AdjMatrix_data1_X_BranchTestpmat_ID_542p2_lambda_0p01_replicate_1.mat 39KB AdjMatrix_data1_X_BranchTestpmat_ID_542p3_lambda_0p01_replicate_1.mat 38KB AdjMatrix_data1_X_BranchTestpmat_ID_541p3_lambda_0p01_replicate_1.mat 46KB AdjMatrix_data1_X_BranchTestpmat_ID_542p1_lambda_0p01_replicate_1.mat 40KB AdjMatrix_data1_X_BranchTestpmat_ID_541p1_lambda_0p01_replicate_1.mat 38KB AdjMatrix_data1_X_BranchTestpmat_ID_541p2_lambda_0p01_replicate_2.mat 38KB AdjMatrix_data1_X_BranchTestpmat_ID_541p2_lambda_0p01_replicate_1.mat 38KB AdjMatrix_data1_X_BranchTestpmat_ID_541p1_lambda_0p01_replicate_2.mat 46KB AdjMatrix_data1_X_BranchTestpmat_ID_542p3_lambda_0p01_replicate_2.mat 38KB AdjMatrix_data1_X_BranchTestpmat_ID_542p1_lambda_0p01_replicate_2.mat 40KB original AdjMatrix_data1_X_SCODE_datapmat_ID_542_lambda_0p01_replicate_1.mat 37KB AdjMatrix_data1_X_SCODE_datapmat_ID_541_lambda_0p01_replicate_2.mat 44KB AdjMatrix_data1_X_SCODE_datapmat_ID_542_lambda_0p01_replicate_2.mat 37KB SINGE_Ranked_Edge_List.txt 37KB SINGE_Gene_Influence.txt 1KB AdjMatrix_data1_X_SCODE_datapmat_ID_541_lambda_0p01_replicate_1.mat 44KB compare_adj_matrices.py 3KB environment.yml 133B compare_example_output.sh 2KB compare_branching_output.sh 2KB high_throughput_test.sh 1KB readme_SINGE_Test.txt 3KB docker_test.sh 1KB run_SINGE_Test.sh 878B SINGE_Test.m 504B standalone_test.sh 666B LICENSE 1KB .dockerignore 86B readme_SINGE_Aggregate.txt 3KB SINGE_Example.m 448B docker Dockerfile 2KB README.md 1KB data3 README.md 1KB X_BMTF.mat 3.34MB
Embeddr_Trajectory.png 1.62MB gene_list.mat 22KB default_hyperparameters.txt 34KB scripts README.md 919B probzeroremoval.txt 2B probremovesample.txt 4B time.txt 22B lambda.txt 21B kernel.txt 9B generate_hyperparameters.sh 890B compile_SINGE.sh 2KB data2 README.md 588B X_DiffGenesAllCells.mat 1010KB gene_list.mat 4KB .travis.yml 3KB run_SINGE_Aggregate_mac.sh 867B run_SINGE_GLG_Test_mac.sh 865B run_SINGE_Aggregate.sh 883B run_SINGE_GLG_Test.sh 882B SINGE.sh 3KB compile_SINGE_mac.sh 903B data_bifurcated get_bifurcated_data_files figure-gfm unnamed-chunk-1-1.png 78KB README.md 4KB gene_list.mat 15KB X_data_bifurcated.mat 4.29MB README.Rmd 2KB资源评论
