dexom-master.zip （73个子文件） 
dexom-master 
.gitignore 1KB dexomInit.m 5KB src evaluation scriptCountFrequencyEssentialGenesByMethod.m 1KB scriptCancerReconstruction.m 4KB evaluateMetaEnsemble.m 246B reconstruction cartesianProd.m 270B runExperiments.m 7KB conditionKnockouts.m 696B simulateKO.m 783B multiNetKnockouts.m 1KB geneKO.m 6KB evaluateModels.m 1KB configureYeastModel.m 2KB mapYeastData.m 1KB evaluateKO.m 2KB countFrequentEssentialGenesFromExportedFiles.m 1KB scriptEvaluationSamplingYeast6.m 2KB scriptYeastEvaluation.m 4KB scriptEvaluationSamplingDAG.m 2KB plotTime.m 1KB loadResultsFromZip.m 322B scriptMetaEnsembles.m 877B exportCancerReconstructions.m 687B exportResults.m 3KB scriptExampleCancerReconstructionRecon3D.m 3KB scriptExportOptimalNetworks.m 898B combineMetabolicNetworksFromFile.m 532B loadEssentialGenePredFromFile.m 257B util pathwayEnrichment.m 3KB restoreCobraToolboxPath.m 411B removeCobraFromPath.m 582B pathwayEnrichmentDistribution.m 540B saveArrayStrings.m 139B methods defaultMethodOptions.m 508B updateAttributes.m 309B dexom dexomSetupOptions.m 108B dexom.m 2KB addIntegerCut.m 968B dexomDefaultOptions.m 3KB statefulDexom.m 6KB changeRxnBoundsMILP.m 2KB updateReactionBounds.m 532B dexomCreateMILP.m 10KB contextSpecificReconstruction.m 3KB tools optimalSparseFBA.m 626B defaultEnumOptions.m 3KB sequentialNetworkEnumeration.m 14KB getUniqueAcceptedSolutions.m 341B dexomSolveCobraMILP.m 893B doReconstruction.m 3KB imat cobraImat.m 4KB setupMethodOptions.m 4KB dexomVersion.m 48B assets 
overview.png 833KB LICENSE 34KB .gitmodules 240B README.md 9KB modules evaluation cobratoolbox test test_ICUT_4S.m 341B createTestDAG.m 608B models dagNet.m 2KB small4S.m 1KB small4M.m 2KB runTests.m 520B test_MINDIST_DAG17.m 723B setupTestDEXOM.m 0B test_DEXOM_4S.m 352B test_ICUT_DAG27.m 301B createTest4S.m 437B test_MAXDIST_4S.m 347B test_MAXDIST_DAG27.m 837B test_DEXOM_SKIP_DAG27.m 486B dagExample.m 774B test_DEXOM_DAG27.m 476B
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