import csv
import torch
import numpy as np
from torch.utils.data import Dataset
def get_adjacent_matrix(distance_file: str, num_nodes: int, id_file: str = None, graph_type="connect") -> np.array:
"""
:param distance_file: str, path of csv file to save the distances between nodes.
:param num_nodes: int, number of nodes in the graph
:param id_file: str, path of txt file to save the order of the nodes.
:param graph_type: str, ["connect", "distance"]
:return:
np.array(N, N)
"""
A = np.zeros([int(num_nodes), int(num_nodes)])
if id_file:
with open(id_file, "r") as f_id:
node_id_dict = {int(node_id): idx for idx, node_id in enumerate(f_id.read().strip().split("\n"))}
with open(distance_file, "r") as f_d:
f_d.readline()
reader = csv.reader(f_d)
for item in reader:
if len(item) != 3:
continue
i, j, distance = int(item[0]), int(item[1]), float(item[2])
if graph_type == "connect":
A[node_id_dict[i], node_id_dict[j]] = 1.
A[node_id_dict[j], node_id_dict[i]] = 1.
elif graph_type == "distance":
A[node_id_dict[i], node_id_dict[j]] = 1. / distance
A[node_id_dict[j], node_id_dict[i]] = 1. / distance
else:
raise ValueError("graph type is not correct (connect or distance)")
return A
with open(distance_file, "r") as f_d:
f_d.readline()
reader = csv.reader(f_d)
for item in reader:
if len(item) != 3:
continue
i, j, distance = int(item[0]), int(item[1]), float(item[2])
if graph_type == "connect":
A[i, j], A[j, i] = 1., 1.
elif graph_type == "distance":
A[i, j] = 1. / distance
A[j, i] = 1. / distance
else:
raise ValueError("graph type is not correct (connect or distance)")
return A
def get_flow_data(flow_file: str) -> np.array:
"""
:param flow_file: str, path of .npz file to save the traffic flow data
:return:
np.array(N, T, D)
"""
data = np.load(flow_file)
flow_data = data['data'].transpose([1, 0, 2])[:, :, 0][:, :, np.newaxis]
return flow_data
class LoadData(Dataset):
def __init__(self, data_path, num_nodes, divide_days, time_interval, history_length, train_mode):
"""
:param data_path: list, ["graph file name" , "flow data file name"], path to save the data file names.
:param num_nodes: int, number of nodes.
:param divide_days: list, [ days of train data, days of test data], list to divide the original data.
:param time_interval: int, time interval between two traffic data records (mins).
:param history_length: int, length of history data to be used.
:param train_mode: list, ["train", "test"].
"""
self.data_path = data_path
self.num_nodes = num_nodes
self.train_mode = train_mode
self.train_days = divide_days[0] # 45
self.test_days = divide_days[1] # 14
self.history_length = history_length # 6
self.time_interval = time_interval # 5 min
self.one_day_length = int(24 * 60 / self.time_interval)
self.graph = get_adjacent_matrix(distance_file=data_path[0], num_nodes=num_nodes)
self.flow_norm, self.flow_data = self.pre_process_data(data=get_flow_data(data_path[1]), norm_dim=1)
def __len__(self):
"""
:return: length of dataset (number of samples).
"""
if self.train_mode == "train":
return self.train_days * self.one_day_length - self.history_length
elif self.train_mode == "test":
return self.test_days * self.one_day_length
else:
raise ValueError("train mode: [{}] is not defined".format(self.train_mode))
def __getitem__(self, index): # (x, y), index = [0, L1 - 1]
"""
:param index: int, range between [0, length - 1].
:return:
graph: torch.tensor, [N, N].
data_x: torch.tensor, [N, H, D].
data_y: torch.tensor, [N, 1, D].
"""
if self.train_mode == "train":
index = index
elif self.train_mode == "test":
index += self.train_days * self.one_day_length
else:
raise ValueError("train mode: [{}] is not defined".format(self.train_mode))
data_x, data_y = LoadData.slice_data(self.flow_data, self.history_length, index, self.train_mode)
data_x = LoadData.to_tensor(data_x) # [N, H, D]
data_y = LoadData.to_tensor(data_y).unsqueeze(1) # [N, 1, D]
return {"graph": LoadData.to_tensor(self.graph), "flow_x": data_x, "flow_y": data_y}
@staticmethod
def slice_data(data, history_length, index, train_mode):
"""
:param data: np.array, normalized traffic data.
:param history_length: int, length of history data to be used.
:param index: int, index on temporal axis.
:param train_mode: str, ["train", "test"].
:return:
data_x: np.array, [N, H, D].
data_y: np.array [N, D].
"""
if train_mode == "train":
start_index = index
end_index = index + history_length
elif train_mode == "test":
start_index = index - history_length
end_index = index
else:
raise ValueError("train model {} is not defined".format(train_mode))
data_x = data[:, start_index: end_index]
data_y = data[:, end_index]
return data_x, data_y
@staticmethod
def pre_process_data(data, norm_dim):
"""
:param data: np.array, original traffic data without normalization.
:param norm_dim: int, normalization dimension.
:return:
norm_base: list, [max_data, min_data], data of normalization base.
norm_data: np.array, normalized traffic data.
"""
norm_base = LoadData.normalize_base(data, norm_dim) # find the normalize base
norm_data = LoadData.normalize_data(norm_base[0], norm_base[1], data) # normalize data
return norm_base, norm_data
@staticmethod
def normalize_base(data, norm_dim):
"""
:param data: np.array, original traffic data without normalization.
:param norm_dim: int, normalization dimension.
:return:
max_data: np.array
min_data: np.array
"""
max_data = np.max(data, norm_dim, keepdims=True) # [N, T, D] , norm_dim=1, [N, 1, D]
min_data = np.min(data, norm_dim, keepdims=True)
return max_data, min_data
@staticmethod
def normalize_data(max_data, min_data, data):
"""
:param max_data: np.array, max data.
:param min_data: np.array, min data.
:param data: np.array, original traffic data without normalization.
:return:
np.array, normalized traffic data.
"""
mid = min_data
base = max_data - min_data
normalized_data = (data - mid) / base
return normalized_data
@staticmethod
def recover_data(max_data, min_data, data):
"""
:param max_data: np.array, max data.
:param min_data: np.array, min data.
:param data: np.array, normalized data.
:return:
recovered_data: np.array, recovered data.
"""
mid = min_data
base = max_data - min_data
recovered_data = data * base + mid
return recovered_data
@staticmethod
def to_tensor(data):
return torch.tensor(data, dtype=torch.float)
if __name__ == '__main__':
train_data = LoadData(data_path=["PeMS_04/PeMS04.csv", "PeMS_04/PeMS04.npz"], nu
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