# FastQC
FastQC is a program designed to spot potential problems in high througput sequencing datasets. It runs a set of analyses on one or more raw sequence files in fastq or bam format and produces a report which summarises the results.
FastQC will highlight any areas where this library looks unusual and where you should take a closer look. The program is not tied to any specific type of sequencing technique and can be used to look at libraries coming from a large number of different experiment types (Genomic Sequencing, ChIP-Seq, RNA-Seq, BS-Seq etc etc).
This project page contains the source code for the application and is only really useful only to people wanting to develop new functionality or trace bugs in FastQC. If you just want to run the program then you want to go to the [**project web page**](http://www.bioinformatics.babraham.ac.uk/projects/fastqc/) where you can download the compiled pacakges for Windows, OSX and Linux.
fastqc-v0.12.1-个人学习 （257个子文件） 
run_fastqc.bat 104B FastMathLiteralArrays.class 146KB LocalizedFormats.class 42KB FastMath.class 35KB Base64.class 21KB RandomDataImpl.class 14KB HTMLReportArchive.class 12KB SVGGenerator$SVGGraphics.class 11KB KmerContent.class 10KB FastQCApplication.class 10KB ResizableDoubleArray.class 9KB AdapterContent.class 9KB ArithmeticUtils.class 8KB PerTileQualityScores.class 8KB FastMathCalc.class 8KB FastQFile.class 7KB OverRepresentedSeqs.class 7KB OfflineRunner.class 7KB DuplicationLevel.class 6KB PerBaseQualityScores.class 6KB UnivariateSolverUtils.class 6KB BasicStats.class 6KB ExceptionContext.class 6KB AbstractQCModule.class 6KB PerSequenceGCContent.class 6KB BAMFile.class 5KB BaseAbstractUnivariateSolver.class 5KB LineGraph.class 5KB SequenceLengthDistribution.class 5KB PerBaseSequenceContent.class 5KB ModuleConfig.class 5KB Precision.class 5KB PerSequenceQualityScores.class 5KB ResultsPanel.class 5KB HypergeometricDistribution.class 5KB NContent.class 4KB QualityBoxPlot.class 4KB FastQCConfig.class 4KB AbstractRealDistribution.class 4KB Fast5File.class 4KB HelpSearchPanel.class 4KB WeibullDistribution.class 4KB AnalysisRunner.class 4KB AbstractIntegerDistribution.class 4KB FastQCMenuBar.class 4KB NormalDistribution.class 4KB FDistribution.class 4KB TileGraph.class 3KB FastQCTitlePanel.class 3KB Gamma.class 3KB ContaminentFinder.class 3KB HelpDialog.class 3KB BetaDistribution.class 3KB BaseGroup.class 3KB PoissonDistribution.class 3KB BasicStats$ResultsTable.class 3KB MathUtils.class 3KB AnalysisQueue.class 3KB KmerContent$Kmer.class 3KB CauchyDistribution.class 3KB ZipfDistribution.class 3KB HelpIndexRoot.class 3KB TDistribution.class 3KB HelpPage.class 3KB Contaminant.class 3KB CasavaBasename.class 3KB BrentSolver.class 3KB GammaDistribution.class 3KB NanoporeBasename.class 3KB ContinuedFraction.class 3KB PhredEncoding.class 3KB SaddlePointExpansion.class 3KB PascalDistribution.class 3KB SVGGenerator.class 3KB BinomialDistribution.class 2KB SequenceFileGroup.class 2KB Base64$OutputStream.class 2KB SequenceFactory.class 2KB BitsStreamGenerator.class 2KB HelpPageDisplay.class 2KB KmerContent$ResultsTable.class 2KB Base64$InputStream.class 2KB AbstractWell.class 2KB OverRepresentedSeqs$OverrepresentedSeq.class 2KB ChiSquaredDistribution.class 2KB OverRepresentedSeqs$ResultsTable.class 2KB HotColdColourGradient.class 2KB MultiMemberGZIPInputStream.class 2KB HelpIndexRoot$FileSorter.class 2KB Beta.class 2KB ResultsPanel$ModuleRenderer.class 2KB QualityCount.class 2KB AdapterContent$ResultsTable.class 2KB MathIllegalStateException.class 2KB AboutDialog.class 2KB ImageToBase64.class 2KB ContaminantHit.class 2KB Sequence.class 2KB Incrementor.class 2KB NoBracketingException.class 2KB共 257 条
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