基于 python 的单细胞转录因子分析
pyscenic
文章目录
• 基于 python 的单细胞转录因子分析
• 前言
• Main
前言
流程极为简单,几乎没有任何难度
Main
Install pyscenic
!Attention, python version >=3.7
pip install pyscenic
Download reference datas
wget -c
https://github.com/aertslab/pySCENIC/archive/refs/heads/master.zip
x master.zip
cd master
mv resources/* ../../
wget -c https://resources.aertslab.org/cistarget/motif2tf/motifs-v9-
nr.hgnc-m0.001-o0.0.tbl
wget -c
https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg19/
refseq_r45/tc_v1/gene_based/encode_20190621__ChIP_seq_transcription_f
actor.hg19-tss-centered-5kb.max.feather
wget -c
https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg19/