Colorectal Nuclear Segmentation and Phenotypes (CoNSeP) Dataset
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Overview:
This dataset was first used in our paper named,
"HoVer-Net: Simultaneous Segmentation and Classification of Nuclei in Multi-Tissue Histology Images"
If using any part of this dataset or the code associated, you must give appropriate citation to our paper, published in Medical Image Analysis.
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Dataset Description:
Each ground truth file is stored as a .mat file, with the keys:
'inst_map'
'type_map'
'inst_type'
'inst_centroid'
'inst_map' is a 1000x1000 array containing a unique integer for each individual nucleus. i.e the map ranges from 0 to N, where 0 is the background and N is the number of nuclei.
'type_map' is a 1000x1000 array where each pixel value denotes the class of that pixel. The map ranges from 0 to 7, where 7 is the total number of classes in CoNSeP.
'inst_type' is a Nx1 array, indicating the type of each instance (in order of inst_map ID)
'inst_centroid' is a Nx2 array, giving the x and y coordinates of the centroids of each instance (in order of inst map ID).
Note, 'inst_type' and 'inst_centroid' are only used while computing the classification statistics.
The values within the class map indicate the category of each nucleus.
Class values: 1 = other
2 = inflammatory
3 = healthy epithelial
4 = dysplastic/malignant epithelial
5 = fibroblast
6 = muscle
7 = endothelial
In our paper we combine classes 3 & 4 into the epithelial class and 5,6 & 7
into the spindle-shaped class.
Total number of nuclei = 24,319
Note, as of 14/03/2020, we switched the GT from .npy files to .mat files for
consistency with the Github repo
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consep数据集,用于病理研究。包括验证集,测试集。 (124个子文件)
.DS_Store 10KB
.DS_Store 6KB
.DS_Store 6KB
train_23.mat 15.29MB
test_11.mat 15.28MB
train_10.mat 15.28MB
test_5.mat 15.28MB
train_8.mat 15.28MB
test_1.mat 15.28MB
train_1.mat 15.28MB
test_10.mat 15.28MB
train_19.mat 15.28MB
train_17.mat 15.28MB
train_6.mat 15.28MB
train_24.mat 15.28MB
train_13.mat 15.28MB
train_22.mat 15.28MB
train_7.mat 15.28MB
train_3.mat 15.27MB
train_9.mat 15.27MB
test_8.mat 15.27MB
test_14.mat 15.27MB
train_20.mat 15.27MB
test_9.mat 15.27MB
train_14.mat 15.27MB
test_12.mat 15.27MB
test_4.mat 15.27MB
test_3.mat 15.27MB
test_6.mat 15.27MB
train_2.mat 15.27MB
train_16.mat 15.27MB
train_21.mat 15.27MB
test_2.mat 15.26MB
test_7.mat 15.26MB
train_15.mat 15.26MB
train_26.mat 15.26MB
train_12.mat 15.26MB
train_11.mat 15.26MB
train_4.mat 15.26MB
train_27.mat 15.26MB
train_25.mat 15.26MB
train_5.mat 15.26MB
test_13.mat 15.25MB
train_15.png 2.03MB
test_10.png 2.03MB
train_15.png 2.02MB
test_5.png 2.01MB
train_20.png 1.97MB
train_17.png 1.97MB
train_1.png 1.95MB
train_8.png 1.94MB
test_3.png 1.94MB
train_13.png 1.94MB
test_8.png 1.94MB
test_1.png 1.94MB
train_10.png 1.91MB
train_3.png 1.91MB
test_11.png 1.88MB
train_23.png 1.88MB
train_24.png 1.88MB
train_19.png 1.88MB
train_20.png 1.87MB
test_10.png 1.87MB
test_3.png 1.87MB
test_5.png 1.87MB
train_6.png 1.86MB
train_22.png 1.86MB
train_9.png 1.86MB
train_14.png 1.84MB
train_24.png 1.84MB
test_13.png 1.84MB
train_22.png 1.84MB
train_2.png 1.83MB
train_7.png 1.83MB
train_17.png 1.83MB
test_7.png 1.83MB
test_12.png 1.83MB
test_4.png 1.82MB
test_2.png 1.82MB
test_2.png 1.82MB
train_21.png 1.82MB
train_3.png 1.81MB
train_2.png 1.81MB
train_13.png 1.81MB
test_14.png 1.81MB
test_8.png 1.8MB
test_7.png 1.8MB
train_8.png 1.8MB
test_9.png 1.8MB
train_1.png 1.8MB
test_13.png 1.78MB
test_12.png 1.78MB
test_1.png 1.77MB
train_14.png 1.77MB
test_4.png 1.76MB
test_6.png 1.75MB
train_19.png 1.75MB
train_10.png 1.74MB
train_9.png 1.74MB
test_11.png 1.74MB
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