nufft.zip_NUFFT_NUFFT MATLAB_非均匀傅里叶

/*You can include any C libraries that you normally use*/ #include "math.h" #include "mex.h" /*This C library is required*/ /* This code implements the expensive convolution loop (see page 448) in [1] L. Greengard and J.-Y. Lee, "Accelerating the Nonuniform Fast Fourier Transform," SIAM Review, 2004. It is slightly different because we are * doing a type-II transform (uniform --> nonuniform) This code is free to use, but we ask that you please reference the source, as this will encourage future funding for more free AFRL products. This code was developed through the AFOSR Lab Task "Moving-Target Radar Feature Extraction." Project Manager: Arje Nachman Principal Investigator: Matthew Ferrara Date: November 2008 Code by (send correspondence to): Matthew Ferrara, Research Mathematician AFRL Sensors Directorate Innovative Algorithms Branch (AFRL/RYAT) [email protected] NOTE: things could be sped up by doing everything with single-precision arithmetic when M_sp<=6 because then the NUFFT is only accurate up to 6 digits. However, I have only been able figure out how to pass double precision data to mex functions... */ #define PI 3.141592653589793 void mexFunction(int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[]) { /*Inside mexFunction---*/ /*Matlab use: [f_taur,f_taui]=... FGG_Convolution2D(double(real(f(:))),double(imag(f(:))),... knots(:),E_3x,E_3y,[M_sp, tau(1), tau(2), M_r(1), M_r(2)]); knots= k-space locations M_r=desired number of space locations in the image grid (Nx x Ny image) */ /*Declarations*/ mxArray *ftaupointr;/*The pointer to the real components of the frequency-domain data*/ mxArray *ftaupointi;/*The pointer to the imaginary components of the frequency-domain data*/ double *ftaur, *ftaui;/*The real and imaginary components of the frequency-domain data*/ mxArray *knotspoint;/*The k-space locations*/ double *knots; double *E_2x,*E_2y,*E_2z; mxArray *E_3xpoint;/*The constant factors of the Gaussian spreading function*/ double *E_3x; mxArray *E_3ypoint;/*The constant factors of the Gaussian spreading function*/ double *E_3y; mxArray *E_3zpoint;/*The constant factors of the Gaussian spreading function*/ double *E_3z; mxArray *Scales_point;/*The spreading distance (have far to truncate the Gaussian)*/ double *Scales; double *outArrayR, *outArrayI; int i, j, k, l1, l2, l3;/*Indexing variables*/ double knotx, knoty,knotz, x, y, z, E_1x, E_1y, E_1z, E_2xdummy, E_2ydummy, E_2zdummy, E_2xdummy_inv, E_2ydummy_inv, E_2zdummy_inv, V0r, V0i, V1r, V1i, V2r, V2i,taux, tauy, tauz, M_rx, M_ry, M_rz, M_rxd2, M_ryd2, M_rzd2, E_1xyz, E_23x,E_23y,E_23z; int M, twoM,N2,N3, m1, m2, m3, lx, rx, ly, ry, lz, rz, xind, yind, zind, ind, M_sp, TwoM_sp, R; /*Copy input pointer fpointr*/ ftaupointr = prhs[0]; /*Copy input pointer fpointi*/ ftaupointi = prhs[1]; /*Copy input pointer knotspoint*/ knotspoint = prhs[2]; /*Copy input pointer E_3xspoint*/ E_3xpoint = prhs[3]; /*Copy input pointer E_3yspoint*/ E_3ypoint = prhs[4]; /*Copy input pointer E_3zspoint*/ E_3zpoint = prhs[5]; /*Copy input pointer Scales_point*/ Scales_point = prhs[6]; /*Get vector f*/ ftaur = mxGetPr(ftaupointr); ftaui = mxGetPr(ftaupointi); M = mxGetM(knotspoint);/*number of data points*/ /*Get matrix knots*/ knots = mxGetPr(knotspoint); /*Get E_3x and E_3y*/ E_3x = mxGetPr(E_3xpoint); E_3y = mxGetPr(E_3ypoint); E_3z = mxGetPr(E_3zpoint); /*Get NUFFT parameters*/ Scales= mxGetPr(Scales_point); M_sp=Scales[0];/*Get M_sp*/ taux=Scales[1];/*Get tau_x*/ tauy=Scales[2];/*Get tau_y*/ tauz=Scales[3];/*Get tau_z*/ M_rx=Scales[4];/*desired time-domain grid length...assume N is even*/ M_ry=Scales[5];/*desired time-domain grid length...assume N is even*/ M_rz=Scales[6];/*desired time-domain grid length...assume N is even*/ /*Store some useful values*/ N2=M_rx*M_ry; N3=M_rx*M_ry*M_rz; twoM=2*M; M_rxd2=M_rx/2; M_ryd2=M_ry/2; M_rzd2=M_rz/2; TwoM_sp=2*M_sp; E_2x=(double*)malloc(TwoM_sp*sizeof(double)); E_2y=(double*)malloc(TwoM_sp*sizeof(double)); E_2z=(double*)malloc(TwoM_sp*sizeof(double)); /*Allocate memory and assign output pointer*/ plhs[0] = mxCreateDoubleMatrix(M, 1, mxREAL);/*mxReal is our data-type*/ plhs[1] = mxCreateDoubleMatrix(M, 1, mxREAL);/*mxReal is our data-type*/ /*Get a pointer to the data space in our newly allocated memory*/ outArrayR = mxGetPr(plhs[0]); outArrayI = mxGetPr(plhs[1]);/*outArrayR+sqrt(-1)*outArrayI = tau = regularly-sampled Fourier data Initialize the output arrays (M_rx x M_ry matrices)*/ for(i=0;i<M;i++) { outArrayR[i]=0; outArrayI[i]=0; } E_2x[M_sp-1]=1; E_2y[M_sp-1]=1; E_2z[M_sp-1]=1; /*Perform the (approximate) convolution loop between data and Gaussian*/ for(i=0;i<M;i++)/*Note: lots of redundant FLOPS here...should be optimized.*/ { /*store the ith datum's knot location*/ knotx= knots[i];/*The ith knot's x location*/ knoty= knots[i+M];/*The ith knot's y location*/ knotz= knots[i+twoM];/*The ith knot's y location*/ /*Determine the closest index [m1,m2]*/ m1=floor(M_rx*knotx/(2*PI)); m2=floor(M_ry*knoty/(2*PI)); m3=floor(M_rz*knotz/(2*PI));/*wasting FLOPs here*/ /*compute the Gaussian factors (we would precompute these in an iterative scheme to save FLOPs)*/ x=knotx-m1*PI/M_rxd2; E_1x=exp(-x*x/(4*taux)); E_2xdummy=exp(x*PI/(M_rx*taux)); E_2xdummy_inv=1/E_2xdummy; y=knoty-m2*PI/M_ryd2; E_1y=exp(-y*y/(4*tauy)); E_2ydummy=exp(y*PI/(M_ry*tauy)); E_2ydummy_inv=1/E_2ydummy; z=knotz-m3*PI/M_rzd2; E_1z=exp(-z*z/(4*tauz)); E_2zdummy=exp(z*PI/(M_rz*tauz)); E_2zdummy_inv=1/E_2zdummy; /*Compute the E_2 vector of powers of the exponential: for(j=0;j<TwoM_sp;j++)//E_2x=E_2xdummy.^((1-M_sp):M_sp); {Here, we are avoiding unnecessary exponential calculations E_2x[j] = pow(E_2xdummy,j-M_sp+1); E_2y[j] = pow(E_2ydummy,j-M_sp+1); }*/ /*Is pow() the fastest thing we have at our disposal?!? It seems very slow. Instead of the pow() loop, we can calculate:*/ for(j=M_sp;j<TwoM_sp;j++)/*E_2x=E_2xdummy.^((1-M_sp):M_sp);*/ {/*Here, we are avoiding unnecessary exponential calculations AND calls to pow()*/ E_2x[j] = E_2xdummy*E_2x[j-1]; E_2y[j] = E_2ydummy*E_2y[j-1]; E_2z[j] = E_2zdummy*E_2z[j-1]; } for(j=M_sp-2;j>=0;j--)/*E_2x=E_2xdummy.^((1-M_sp):M_sp);*/ {/*Here, we are avoiding unnecessary exponential calculations AND calls to pow()*/ E_2x[j] = E_2x[j+1]*E_2xdummy_inv; E_2y[j] = E_2y[j+1]*E_2ydummy_inv; E_2z[j] = E_2z[j+1]*E_2zdummy_inv; } /*The to small loops above appear to be much faster than the call to pow(). As a non-C programmer, I am very disappointed that I had to do this explicitly.*/ /*Now we can compute the first constants (see the algorithm description on page 448 of [1])*/ E_1xyz=E_1x*E_1y*E_1z; V0r=E_1xyz; /*Compute f[i]'s contribution to the neighboring grid points Note: We need to make sure the convolution wraps around at the boundaries*/ for(l3=(1-M_sp);l3<=M_sp;l3++)/*loop over z dimension*/ { E_23z=E_2z[M_sp+l3-1]*E_3z[M_sp+l3-1]; V2r=V0r*E_23z;