snorkeling:使用Snorkel from从文献中提取生物医学关系:person_swimming:
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2021-05-24
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snorkeling:使用Snorkel from从文献中提取生物医学关系:person_swimming: （822个子文件） 
compound_binds_gene_word_vectors.bin 134B disease_associates_gene_word_vectors.bin 134B compound_treats_disease_word_vectors.bin 134B gene_interacts_gene_word_vectors.bin 134B epilepsy-associated-genes.csv 28KB gen_model_marginals_history.csv 12KB epilepsy_tags_shelve.dat 133B epilepsy_tags_shelve.dir 334KB .gitattributes 126B .gitignore 56B .gitmodules 0B single_task_experiment.ipynb 5.49MB generative_model_figure_generator.ipynb 1.35MB gen_model_benchmarking.ipynb 748KB gen_model_benchmarking_210.ipynb 613KB gen_model_benchmarking_old.ipynb 441KB transfer_learning.ipynb 430KB label_sampling_experiment.ipynb 378KB label_sampling_experiment.ipynb 372KB label_sampling_experiment.ipynb 368KB label_sampling_experiment.ipynb 362KB disc_model_analysis.ipynb 348KB disc_model_analysis.ipynb 344KB disc_model_analysis.ipynb 326KB entity_prediction.ipynb 323KB disc_model_figure_generator.ipynb 304KB discriminator_model_benchmarking.ipynb 294KB edge_prediction_figure_generator.ipynb 125KB edge_prediction_experiment.ipynb 125KB edge_prediction_experiment.ipynb 125KB edge_prediction_experiment.ipynb 124KB edge_prediction_experiment.ipynb 121KB model_calibration_figure_generator.ipynb 89KB disc_model_off_label_analysis.ipynb 87KB dataset_statistics.ipynb 81KB literature_model_figure_generator.ipynb 80KB model_calibration_experiment.ipynb 67KB model_calibration_experiment.ipynb 66KB model_calibration_experiment.ipynb 65KB dataset_statistics.ipynb 64KB dataset_statistics.ipynb 63KB model_calibration_experiment.ipynb 62KB dataset_statistics.ipynb 62KB coco_score.ipynb 60KB global_network_datafile_generator.ipynb 59KB generate_top_predictions_table.ipynb 58KB coco_score.ipynb 57KB coco_score.ipynb 51KB coco_score.ipynb 49KB prior_edge_prob_notebook.ipynb 41KB compound_gene_datafile_generator.ipynb 38KB compound_disease_datafile_generator.ipynb 31KB gene_gene_datafile_generator.ipynb 30KB disease_gene_datafile_generator.ipynb 27KB embed_sentences.ipynb 21KB generate_word_vectors.ipynb 20KB embed_sentences.ipynb 19KB generate_word_vectors.ipynb 17KB embed_sentences.ipynb 17KB generate_word_vectors.ipynb 16KB generate_word_vectors.ipynb 16KB 2.epilepsy-labeler.ipynb 15KB 2.epilepsy-labeler-checkpoint.ipynb 15KB pubtator-to-postgres.ipynb 14KB entity_level_features_pubmed.ipynb 13KB 3.epilepsy-ml-run-checkpoint.ipynb 13KB 3.epilepsy-ml-run.ipynb 13KB stratify_candidates.ipynb 9KB embed_sentences.ipynb 8KB epilepsy-genes.ipynb 7KB 1.epilepsy-data-parser.ipynb 7KB LICENSE-CC0.md 7KB project_report.md 5KB README.md 4KB LICENSE-BSD.md 2KB README.md 737B label_matricies.pkl 6.34MB label_matricies.pkl 4.31MB label_matricies.pkl 4.28MB train_marginals.pkl 781KB
transfer_dev_set_auprc.png 264KB transfer_test_set_auprc.png 262KB model_calibration.png 220KB transfer_dev_set_auroc.png 197KB transfer_test_set_auroc.png 195KB transfer_dev_set_aupr.png 189KB transfer_test_set_aupr.png 184KB disc_model_test_aupr.png 167KB disc_model_dev_auroc.png 167KB all_lf_dev_set_auroc.png 165KB indiv_grid_dev_set_aupr.png 164KB indiv_grid_test_set_aupr.png 164KB disc_model_test_auroc.png 163KB disc_model_dev_aupr.png 163KB indiv_grid_test_set_auroc.png 163KB indiv_grid_dev_set_auroc.png 162KB all_lf_test_set_auroc.png 162KB all_lf_dev_set_aupr.png 161KB all_lf_test_set_aupr.png 156KB hexbin-prediction-correlation.png 96KB共 822 条
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