# NemaNode
Interactive map of nervous system wiring in the nematode _C. elegans_. Live at [NemaNode.org](https://nemanode.org/).
## Required software
- [Node.js](https://nodejs.org/en/) >= 11.15.0
- [MySQL](https://www.mysql.com/downloads/) >= 5.6
- [GCC/g++ compiler](https://packages.ubuntu.com/focal/build-essential)
## Development setup
1. Setup MySQL if first-time use: `sudo mysql_secure_installation`
2. Install app dependencies by running `npm install`
3. Setup MySQL user and database: `scripts/setup_config.sh nemanode nemanode_user password | sudo mysql`
4. Populate database: `npm run populate-database`
## Commands
Once setup is completed, you will be able to run the following commands in this project directory:
- `npm run watch` or `npm start`: start a app server to test alongside development (localhost:3000)
- `npm run build-prod`: build the production version of the app
- `npm run test`: run the tests
- `populate-database`: take the raw data in src/server/db/raw-data and populate the mysql db with it
## Documentation
For more information on how to do various things read the documentation
- [Understanding the data used in nemanode](https://bitbucket.org/witvliet/nemanode/src/development/docs/understanding-nemanode-data.md)
- [Adding new data to nemanode](https://bitbucket.org/witvliet/nemanode/src/development/docs/adding-new-data.md)
- [Deployment to AWS](https://bitbucket.org/witvliet/nemanode/src/development/docs/deployment-to-aws.md)
NemaNode:线虫秀丽隐杆线虫的神经连接的互动地图。 在http上在线
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2021-05-05
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NemaNode:线虫秀丽隐杆线虫的神经连接的互动地图。 在http上在线 （180个子文件） 
.babelrc 92B icomoon.eot 11KB .gitignore 206B ntv-direction-axis.glb 454KB
webpack-template.index.html 27KB favicon.ico 1KB model-cytoscape-adaptor.test.js 28KB network.js 27KB trajectory-visualization.js 23KB index.js 16KB orthographic-trackball-controls.js 15KB network-style.js 14KB test_populate_database.js 13KB cytoscape-adaptor.js 11KB trajectory-ui.js 11KB tour-steps.js 10KB options.js 8KB popup.js 8KB help.js 7KB groups.js 7KB cookies.js 6KB model.split-join.test.js 6KB data-service.js 6KB model.setters.test.js 6KB split-join.js 6KB nematode-connections.js 6KB input.js 5KB model.groups.test.js 5KB index.js 5KB init.js 5KB cell-info.js 4KB webpack.config.js 4KB hidden.js 4KB searchbar.js 4KB populate-connections.js 4KB services.js 4KB load-data.js 4KB model.summary.test.js 4KB index.js 4KB notification.js 4KB legend.js 4KB graph.js 3KB nematode-neuron-trajectories.js 3KB tour.js 3KB index.js 3KB index.js 3KB data-service.test.js 3KB nematode-connections.test.js 3KB setters.js 2KB model.hide.test.js 2KB layout.js 2KB model.position.test.js 2KB position.js 2KB ui-constants.js 2KB routes.js 2KB cell-info.test.js 2KB model.test.js 2KB index.js 2KB .eslintrc.js 2KB info.js 2KB model.grow.test.js 2KB grow.js 2KB model.graph.test.js 1KB model.input.test.js 1KB model.layout.test.js 1KB summary.js 1KB index.js 1KB index.js 1KB hidden.js 996B EventEmitter.js 845B selected.js 834B nematode-cells.js 826B config.js 660B nematode-cells.test.js 608B populate-neuron-trajectories.js 570B populate-cells.js 567B download-data.js 565B populate-datasets.js 539B logger.js 422B after-tests.js 359B before-tests.js 346B nematode-datasets.js 277B base-view.js 215B register-cytoscape-extensions.js 202B jest.config.js 190B witvliet_2020_8.json 16.33MB witvliet_2020_5.json 11.46MB witvliet_2020_7.json 10.48MB witvliet_2020_6.json 6.76MB witvliet_2020_4.json 5.89MB witvliet_2020_3.json 5.12MB witvliet_2020_1.json 4.55MB witvliet_2020_2.json 4.4MB witvliet_2020_8.json 867KB witvliet_2020_7.json 834KB package-lock.json 639KB witvliet_2020_5.json 561KB witvliet_2020_6.json 543KB witvliet_2020_4.json 394KB white_1986_whole.json 367KB共 180 条
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