genomics:与基因组学和生物信息学有关的脚本和注释的集合_基因组注释脚本资源-CSDN文库

共47个文件

md：21个

sh：13个

r：9个

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package

genomics-master.zip （47个子文件）

folder

genomics-master

.gitignore 1KB

folder

functions-r

plotPCAWithSampleNames.R 2KB

folder

notes

rna-seq.md 3KB

files-fasta.md 1KB

files-gtf.md 841B

r.md 4KB

single-cell-rna-seq.md 828B

files-vcf.md 275B

files-fastq.md 411B

heatmaps.md 6KB

pathways.md 1KB

rna-seq-strand.md 2KB

converting-files.md 1KB

files-chrom-sizes.md 216B

folder

scripts-bigpurple

assembly-10x-supernova.sh 4KB

scrna-10x-cellranger-aggr.sh 2KB

scrna-10x-cellranger-count.sh 3KB

cnvs-wgs-freec.sh 11KB

scrna-10x-cellranger-count-features.sh 4KB

folder

scripts

snvs-cnvs-mutect-strelka-freec-pyclone.R 12KB

scrna-decontaminate-soupx.R 4KB

csv-clean.sh 974B

meth-minfi.R 8KB

mut-mhc-binding.pl 15KB

fastq-quality-bars.sh 2KB

scrna-10x-seurat-3.R 92KB

fastq-merge.pl 3KB

cnv-freec-genome-plot.R 3KB

scrna-10x-seurat-2.R 66KB

gtf-remove-overlapping.pl 3KB

cnv-freec-heatmap.R 2KB

scrna-10x-seurat-1.R 35KB

README.md 502B

folder

workflows

rna-seq-diff-exp.md 1KB

ref-genome-gfp.md 3KB

draft-genome-init.md 9KB

microarray.md 385B

nanopore-init.md 5KB

ref-genome-init.md 151B

rrna-ref.md 3KB

gatk-mouse-mm10.md 3KB

folder

scripts-phoenix

assembly-10x-supernova.sh 4KB

scrna-10x-cellranger-aggr.sh 2KB

scrna-10x-cellranger-count.sh 3KB

join-all.sh 1KB

bcl2fastq-sample-sheet-fix.sh 2KB

wgs-10x-longranger.sh 3KB

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李青廷Austin

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